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  5. AT3G53450

AT3G53450


Description : Putative lysine decarboxylase family protein


Gene families : OG_01_0000372 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000372_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G53450
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AT5G03270 No alias lysine decarboxylase family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07894.1 No alias cytokinin phosphoribohydrolase (LOG) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
BP GO:0000103 sulfate assimilation IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004124 cysteine synthase activity IEP HCCA
MF GO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity IEP HCCA
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0004686 elongation factor-2 kinase activity IEP HCCA
MF GO:0004708 MAP kinase kinase activity IEP HCCA
MF GO:0004723 calcium-dependent protein serine/threonine phosphatase activity IEP HCCA
MF GO:0004844 uracil DNA N-glycosylase activity IEP HCCA
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP HCCA
MF GO:0005347 ATP transmembrane transporter activity IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006568 tryptophan metabolic process IEP HCCA
BP GO:0006569 tryptophan catabolic process IEP HCCA
BP GO:0006586 indolalkylamine metabolic process IEP HCCA
MF GO:0008106 alcohol dehydrogenase (NADP+) activity IEP HCCA
MF GO:0008265 Mo-molybdopterin cofactor sulfurase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 cellular amino acid biosynthetic process IEP HCCA
BP GO:0009074 aromatic amino acid family catabolic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009403 toxin biosynthetic process IEP HCCA
BP GO:0009683 indoleacetic acid metabolic process IEP HCCA
BP GO:0009684 indoleacetic acid biosynthetic process IEP HCCA
BP GO:0009692 ethylene metabolic process IEP HCCA
BP GO:0009693 ethylene biosynthetic process IEP HCCA
BP GO:0009700 indole phytoalexin biosynthetic process IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
CC GO:0009925 basal plasma membrane IEP HCCA
BP GO:0010087 phloem or xylem histogenesis IEP HCCA
BP GO:0010089 xylem development IEP HCCA
BP GO:0010117 photoprotection IEP HCCA
BP GO:0010120 camalexin biosynthetic process IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
BP GO:0010338 leaf formation IEP HCCA
BP GO:0010358 leaf shaping IEP HCCA
BP GO:0010359 regulation of anion channel activity IEP HCCA
MF GO:0010436 carotenoid dioxygenase activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP HCCA
BP GO:0016233 telomere capping IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016783 sulfurtransferase activity IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0019209 kinase activator activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0030091 protein repair IEP HCCA
MF GO:0030295 protein kinase activator activity IEP HCCA
CC GO:0031501 mannosyltransferase complex IEP HCCA
MF GO:0031624 ubiquitin conjugating enzyme binding IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of ion transmembrane transporter activity IEP HCCA
CC GO:0033185 dolichol-phosphate-mannose synthase complex IEP HCCA
BP GO:0034754 cellular hormone metabolic process IEP HCCA
BP GO:0034765 regulation of ion transmembrane transport IEP HCCA
BP GO:0035264 multicellular organism growth IEP HCCA
BP GO:0042436 indole-containing compound catabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043449 cellular alkene metabolic process IEP HCCA
BP GO:0043450 alkene biosynthetic process IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0043966 histone H3 acetylation IEP HCCA
BP GO:0044070 regulation of anion transport IEP HCCA
MF GO:0044390 ubiquitin-like protein conjugating enzyme binding IEP HCCA
CC GO:0045177 apical part of cell IEP HCCA
MF GO:0045549 9-cis-epoxycarotenoid dioxygenase activity IEP HCCA
BP GO:0045926 negative regulation of growth IEP HCCA
BP GO:0046217 indole phytoalexin metabolic process IEP HCCA
BP GO:0046218 indolalkylamine catabolic process IEP HCCA
BP GO:0046620 regulation of organ growth IEP HCCA
BP GO:0046621 negative regulation of organ growth IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048232 male gamete generation IEP HCCA
BP GO:0048598 embryonic morphogenesis IEP HCCA
BP GO:0048640 negative regulation of developmental growth IEP HCCA
BP GO:0048826 cotyledon morphogenesis IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051865 protein autoubiquitination IEP HCCA
BP GO:0052314 phytoalexin metabolic process IEP HCCA
BP GO:0052315 phytoalexin biosynthetic process IEP HCCA
BP GO:0052317 camalexin metabolic process IEP HCCA
BP GO:0060359 response to ammonium ion IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
CC GO:0071944 cell periphery IEP HCCA
MF GO:0097506 deaminated base DNA N-glycosylase activity IEP HCCA
BP GO:0120251 hydrocarbon biosynthetic process IEP HCCA
BP GO:0120252 hydrocarbon metabolic process IEP HCCA
BP GO:0120254 olefinic compound metabolic process IEP HCCA
BP GO:0120255 olefinic compound biosynthetic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1900673 olefin metabolic process IEP HCCA
BP GO:1900674 olefin biosynthetic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903959 regulation of anion transmembrane transport IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR031100 LOG_fam 58 188
PLAZA 3.0 Dicots AT3G53450