AT3G55170

Description : Ribosomal L29 family protein

Gene families : OG_01_0001104 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G55170
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
Cre14.g617900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g07170.1	No alias	component RPL35 of LSU proteome component	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g05620.1	No alias	component RPL35 of LSU proteome component	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_5200V3.1	No alias	Ribosomal L29 family protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c26_13720V3.1	No alias	Ribosomal L29 family protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_2800V3.1	No alias	Ribosomal L29 family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_30730V3.1	No alias	Ribosomal L29 family protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
MF	GO:0000036	acyl carrier activity	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004774	succinate-CoA ligase activity	IEP	HCCA
MF	GO:0004776	succinate-CoA ligase (GDP-forming) activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005742	mitochondrial outer membrane translocase complex	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006333	chromatin assembly or disassembly	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016925	protein sumoylation	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034613	cellular protein localization	IEP	HCCA
BP	GO:0035265	organ growth	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
MF	GO:0051192	prosthetic group binding	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098799	outer mitochondrial membrane protein complex	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	8	64

External Links

PLAZA 3.0 Dicots	AT3G55170

AT3G55170

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation