AT3G58220


Description : TRAF-like family protein


Gene families : OG_01_0000081 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58220
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AT2G01790 No alias TRAF-like family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42455 No alias No description available 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42465 No alias No description available 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42475 No alias No description available 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42480 No alias TRAF-like family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G44800 No alias Meprin and TRAF (MATH) homology domain-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58210 No alias TRAF-like family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58240 No alias TRAF-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58260 No alias TRAF-like family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58290 No alias TRAF-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58300 No alias Arabidopsis phospholipase-like protein (PEARLI 4) family 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58330 No alias Arabidopsis phospholipase-like protein (PEARLI 4) family 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58360 No alias TRAF-like family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 17 137
PLAZA 3.0 Dicots AT3G58220