Description : TRAF-like family protein
Gene families : OG_01_0000081 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000081_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT3G58220 | |
Cluster | HCCA: Cluster_31 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G01790 | No alias | TRAF-like family protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT2G42455 | No alias | No description available | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT2G42465 | No alias | No description available | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT2G42475 | No alias | No description available | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT2G42480 | No alias | TRAF-like family protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT3G44800 | No alias | Meprin and TRAF (MATH) homology domain-containing protein | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT3G58210 | No alias | TRAF-like family protein | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT3G58240 | No alias | TRAF-like superfamily protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT3G58260 | No alias | TRAF-like family protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT3G58290 | No alias | TRAF-like superfamily protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT3G58300 | No alias | Arabidopsis phospholipase-like protein (PEARLI 4) family | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT3G58330 | No alias | Arabidopsis phospholipase-like protein (PEARLI 4) family | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
AT3G58360 | No alias | TRAF-like family protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | ND | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
CC | GO:0005737 | cytoplasm | ISM | Interproscan |
BP | GO:0008150 | biological_process | ND | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEP | HCCA |
BP | GO:0002376 | immune system process | IEP | HCCA |
MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004527 | exonuclease activity | IEP | HCCA |
CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
BP | GO:0006325 | chromatin organization | IEP | HCCA |
BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
BP | GO:0006346 | DNA methylation-dependent heterochromatin assembly | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006955 | immune response | IEP | HCCA |
BP | GO:0007267 | cell-cell signaling | IEP | HCCA |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
BP | GO:0009615 | response to virus | IEP | HCCA |
BP | GO:0009616 | RNAi-mediated antiviral immune response | IEP | HCCA |
BP | GO:0009791 | post-embryonic development | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010050 | vegetative phase change | IEP | HCCA |
BP | GO:0010267 | production of ta-siRNAs involved in RNA interference | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016246 | RNA interference | IEP | HCCA |
BP | GO:0016441 | posttranscriptional gene silencing | IEP | HCCA |
BP | GO:0023052 | signaling | IEP | HCCA |
BP | GO:0030422 | production of siRNA involved in RNA interference | IEP | HCCA |
BP | GO:0031047 | gene silencing by RNA | IEP | HCCA |
BP | GO:0031050 | dsRNA processing | IEP | HCCA |
BP | GO:0031507 | heterochromatin assembly | IEP | HCCA |
CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
BP | GO:0034728 | nucleosome organization | IEP | HCCA |
BP | GO:0035194 | post-transcriptional gene silencing by RNA | IEP | HCCA |
BP | GO:0035196 | production of miRNAs involved in gene silencing by miRNA | IEP | HCCA |
BP | GO:0040029 | regulation of gene expression, epigenetic | IEP | HCCA |
CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
BP | GO:0045087 | innate immune response | IEP | HCCA |
BP | GO:0045787 | positive regulation of cell cycle | IEP | HCCA |
BP | GO:0045814 | negative regulation of gene expression, epigenetic | IEP | HCCA |
BP | GO:0051607 | defense response to virus | IEP | HCCA |
BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
BP | GO:0070828 | heterochromatin organization | IEP | HCCA |
BP | GO:0070918 | production of small RNA involved in gene silencing by RNA | IEP | HCCA |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
BP | GO:0080188 | gene silencing by RNA-directed DNA methylation | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0098542 | defense response to other organism | IEP | HCCA |
BP | GO:0140458 | pre-transcriptional gene silencing by RNA | IEP | HCCA |
BP | GO:0140546 | defense response to symbiont | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002083 | MATH/TRAF_dom | 17 | 137 |
PLAZA 3.0 Dicots | AT3G58220 |