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AT3G58510


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG_01_0001673 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G58510
Cluster HCCA: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
AT3G58570 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g08020.1 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_17810V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_40410V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_1920V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005777 peroxisome IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 175 354
IPR001650 Helicase_C 389 503
PLAZA 3.0 Dicots AT3G58510