Coexpression cluster: Cluster_228 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0070585 protein localization to mitochondrion 4.86% (7/144) 3.68 1e-06 0.000469
GO:0072655 establishment of protein localization to mitochondrion 4.86% (7/144) 3.68 1e-06 0.000469
GO:0006396 RNA processing 11.11% (16/144) 1.98 3e-06 0.000709
GO:0090304 nucleic acid metabolic process 18.06% (26/144) 1.44 3e-06 0.000815
GO:0006139 nucleobase-containing compound metabolic process 20.83% (30/144) 1.26 5e-06 0.000929
GO:0006626 protein targeting to mitochondrion 4.86% (7/144) 3.71 1e-06 0.001236
GO:0006260 DNA replication 6.25% (9/144) 2.73 9e-06 0.001421
GO:0046483 heterocycle metabolic process 22.22% (32/144) 1.14 1.5e-05 0.001443
GO:0032259 methylation 8.33% (12/144) 2.19 1.4e-05 0.001494
GO:0043414 macromolecule methylation 8.33% (12/144) 2.19 1.4e-05 0.001494
GO:0006839 mitochondrial transport 4.86% (7/144) 3.17 1.4e-05 0.001792
GO:0007020 microtubule nucleation 3.47% (5/144) 3.86 2.5e-05 0.002175
GO:0016070 RNA metabolic process 13.89% (20/144) 1.47 3.4e-05 0.002779
GO:0018193 peptidyl-amino acid modification 6.94% (10/144) 2.26 5e-05 0.003541
GO:0034641 cellular nitrogen compound metabolic process 22.22% (32/144) 1.05 4.8e-05 0.003598
GO:0018205 peptidyl-lysine modification 6.25% (9/144) 2.34 7.8e-05 0.005176
GO:0043170 macromolecule metabolic process 29.17% (42/144) 0.83 9.1e-05 0.005664
GO:0006261 DNA-dependent DNA replication 4.86% (7/144) 2.71 0.000103 0.005752
GO:0008380 RNA splicing 5.56% (8/144) 2.49 9.9e-05 0.005792
GO:0006725 cellular aromatic compound metabolic process 22.22% (32/144) 0.99 0.000114 0.006037
GO:0051607 defense response to virus 4.17% (6/144) 2.93 0.000144 0.006907
GO:0140546 defense response to symbiont 4.17% (6/144) 2.93 0.000144 0.006907
GO:0044260 cellular macromolecule metabolic process 23.61% (34/144) 0.92 0.000155 0.007137
GO:0031047 gene silencing by RNA 4.17% (6/144) 2.85 0.000197 0.008674
GO:0010629 negative regulation of gene expression 6.25% (9/144) 2.13 0.000232 0.009058
GO:0007276 gamete generation 2.08% (3/144) 4.65 0.000227 0.009213
GO:0032501 multicellular organismal process 15.28% (22/144) 1.2 0.00022 0.009275
GO:0042023 DNA endoreduplication 3.47% (5/144) 3.11 0.000294 0.011081
GO:0044786 cell cycle DNA replication 3.47% (5/144) 3.1 0.000306 0.011153
GO:0009067 aspartate family amino acid biosynthetic process 3.47% (5/144) 3.05 0.00036 0.012677
GO:0009615 response to virus 4.17% (6/144) 2.67 0.000382 0.013019
GO:0016570 histone modification 5.56% (8/144) 2.13 0.000524 0.017302
GO:0006807 nitrogen compound metabolic process 29.86% (43/144) 0.69 0.000596 0.019086
GO:1901360 organic cyclic compound metabolic process 21.53% (31/144) 0.87 0.000644 0.020011
GO:0009640 photomorphogenesis 4.17% (6/144) 2.46 0.000834 0.022587
GO:0009066 aspartate family amino acid metabolic process 3.47% (5/144) 2.79 0.000821 0.022805
GO:0016571 histone methylation 4.86% (7/144) 2.24 0.000758 0.022882
GO:0006479 protein methylation 4.86% (7/144) 2.22 0.000806 0.023012
GO:0008213 protein alkylation 4.86% (7/144) 2.22 0.000806 0.023012
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity 1.39% (2/144) 5.42 0.000946 0.024375
GO:0009791 post-embryonic development 6.94% (10/144) 1.73 0.000927 0.024462
GO:0006913 nucleocytoplasmic transport 3.47% (5/144) 2.7 0.001087 0.02669
GO:0051169 nuclear transport 3.47% (5/144) 2.7 0.001087 0.02669
GO:0031461 cullin-RING ubiquitin ligase complex 3.47% (5/144) 2.59 0.001493 0.029752
GO:0048609 multicellular organismal reproductive process 4.17% (6/144) 2.34 0.001274 0.029885
GO:0051276 chromosome organization 4.17% (6/144) 2.34 0.001245 0.029886
GO:0043226 organelle 72.92% (105/144) 0.26 0.001483 0.030122
GO:0043229 intracellular organelle 72.92% (105/144) 0.26 0.001458 0.030194
GO:0043227 membrane-bounded organelle 72.22% (104/144) 0.27 0.001577 0.030278
GO:0043231 intracellular membrane-bounded organelle 72.22% (104/144) 0.27 0.001551 0.030322
GO:0008652 cellular amino acid biosynthetic process 5.56% (8/144) 1.9 0.001446 0.03054
GO:0000278 mitotic cell cycle 3.47% (5/144) 2.57 0.001621 0.030572
GO:0000226 microtubule cytoskeleton organization 4.17% (6/144) 2.26 0.001652 0.030613
GO:0010605 negative regulation of macromolecule metabolic process 6.94% (10/144) 1.65 0.001437 0.030976
GO:0034968 histone lysine methylation 4.17% (6/144) 2.32 0.001361 0.03125
GO:0043412 macromolecule modification 13.89% (20/144) 1.06 0.001421 0.031263
GO:0018022 peptidyl-lysine methylation 4.17% (6/144) 2.31 0.001392 0.031265
GO:0009086 methionine biosynthetic process 2.78% (4/144) 2.97 0.001743 0.031743
GO:0006305 DNA alkylation 3.47% (5/144) 2.49 0.002054 0.033887
GO:0006306 DNA methylation 3.47% (5/144) 2.49 0.002054 0.033887
GO:0006555 methionine metabolic process 2.78% (4/144) 2.9 0.002092 0.033981
GO:0032991 protein-containing complex 11.11% (16/144) 1.18 0.001913 0.03424
GO:0009616 RNAi-mediated antiviral immune response 2.78% (4/144) 2.93 0.001947 0.034269
GO:0044728 DNA methylation or demethylation 3.47% (5/144) 2.47 0.00216 0.034565
GO:0009892 negative regulation of metabolic process 6.94% (10/144) 1.58 0.002017 0.03491
GO:0006304 DNA modification 3.47% (5/144) 2.46 0.002215 0.034912
GO:0007389 pattern specification process 4.86% (7/144) 1.99 0.002052 0.034946
GO:0000151 ubiquitin ligase complex 3.47% (5/144) 2.44 0.002385 0.036506
GO:0007017 microtubule-based process 4.17% (6/144) 2.15 0.00242 0.036514
GO:0003916 DNA topoisomerase activity 1.39% (2/144) 4.78 0.002352 0.03652
GO:0051302 regulation of cell division 2.08% (3/144) 3.47 0.002535 0.036674
GO:0051567 histone H3-K9 methylation 3.47% (5/144) 2.42 0.002504 0.036727
GO:0061647 histone H3-K9 modification 3.47% (5/144) 2.42 0.002504 0.036727
GO:0006259 DNA metabolic process 6.25% (9/144) 1.63 0.002636 0.037623
GO:0010267 production of ta-siRNAs involved in RNA interference 2.78% (4/144) 2.79 0.002744 0.038638
GO:0072594 establishment of protein localization to organelle 5.56% (8/144) 1.72 0.003181 0.043623
GO:0009987 cellular process 47.92% (69/144) 0.39 0.003167 0.044007
GO:0033365 protein localization to organelle 5.56% (8/144) 1.71 0.003306 0.044762
GO:1901607 alpha-amino acid biosynthetic process 4.86% (7/144) 1.86 0.003383 0.045224
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 2.78% (4/144) 2.67 0.00374 0.049372
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_14 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_23 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_24 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_27 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_28 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_31 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_36 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_37 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_38 0.022 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_40 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_44 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_54 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_63 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_74 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_75 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_83 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_84 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_86 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_93 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_108 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_112 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_124 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_127 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_130 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_131 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_152 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_157 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_160 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_166 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_167 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_168 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_172 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_183 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_190 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_204 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_218 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_240 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_248 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_252 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_254 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_255 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_256 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_264 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_268 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_324 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_26 0.028 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_28 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_76 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_119 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_165 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_40 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_54 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_77 0.023 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_88 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_104 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_170 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_27 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_67 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_104 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_112 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_132 0.037 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_169 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_191 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_214 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_234 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_245 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_252 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_259 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_262 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_292 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_10 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_115 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_132 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_134 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_137 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_156 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_158 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_179 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (144) (download table)

InterPro Domains

GO Terms

Family Terms