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AT4G08210


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0016098 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G08210
Cluster HCCA: Cluster_38


Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
BP GO:0000338 protein deneddylation IEP HCCA
CC GO:0000932 P-body IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity IEP HCCA
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
MF GO:0004686 elongation factor-2 kinase activity IEP HCCA
MF GO:0004843 thiol-dependent deubiquitinase IEP HCCA
MF GO:0004844 uracil DNA N-glycosylase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0007032 endosome organization IEP HCCA
MF GO:0008106 alcohol dehydrogenase (NADP+) activity IEP HCCA
CC GO:0008180 COP9 signalosome IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010026 trichome differentiation IEP HCCA
BP GO:0010387 COP9 signalosome assembly IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016929 SUMO-specific protease activity IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
CC GO:0031501 mannosyltransferase complex IEP HCCA
CC GO:0033185 dolichol-phosphate-mannose synthase complex IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
BP GO:0060359 response to ammonium ion IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0080171 lytic vacuole organization IEP HCCA
MF GO:0097506 deaminated base DNA N-glycosylase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1990019 protein storage vacuole organization IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 70 117
IPR002885 Pentatricopeptide_repeat 508 554
IPR002885 Pentatricopeptide_repeat 170 199
IPR002885 Pentatricopeptide_repeat 410 439
IPR002885 Pentatricopeptide_repeat 583 606
IPR002885 Pentatricopeptide_repeat 144 169
IPR002885 Pentatricopeptide_repeat 205 233
PLAZA 3.0 Dicots AT4G08210