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  5. AT4G18840

AT4G18840


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0000019 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G18840
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G03880 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34400 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G20770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39680 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_5040V3.1 No alias mitochondrial editing factor 22 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_12230V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000373 Group II intron splicing IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 343 363
IPR002885 Pentatricopeptide_repeat 239 266
IPR002885 Pentatricopeptide_repeat 443 467
IPR002885 Pentatricopeptide_repeat 106 132
IPR002885 Pentatricopeptide_repeat 179 202
IPR002885 Pentatricopeptide_repeat 369 415
IPR002885 Pentatricopeptide_repeat 205 238
IPR002885 Pentatricopeptide_repeat 267 315
PLAZA 3.0 Dicots AT4G18840