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AT4G20340


Description : Transcription factor TFIIE, alpha subunit


Gene families : OG_01_0001850 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G20340
Cluster HCCA: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
Cre11.g481550 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005673 transcription factor TFIIE complex ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000280 nuclear division IEP HCCA
CC GO:0000419 RNA polymerase V complex IEP HCCA
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP HCCA
BP GO:0000719 photoreactive repair IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
CC GO:0001673 male germ cell nucleus IEP HCCA
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP HCCA
MF GO:0004022 alcohol dehydrogenase (NAD+) activity IEP HCCA
MF GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004610 phosphoacetylglucosamine mutase activity IEP HCCA
MF GO:0004614 phosphoglucomutase activity IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006041 glucosamine metabolic process IEP HCCA
BP GO:0006042 glucosamine biosynthetic process IEP HCCA
BP GO:0006047 UDP-N-acetylglucosamine metabolic process IEP HCCA
BP GO:0006048 UDP-N-acetylglucosamine biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006290 pyrimidine dimer repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006560 proline metabolic process IEP HCCA
BP GO:0006561 proline biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007135 meiosis II IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
CC GO:0008076 voltage-gated potassium channel complex IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0008180 COP9 signalosome IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009853 photorespiration IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010098 suspensor development IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010115 regulation of abscisic acid biosynthetic process IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
MF GO:0010301 xanthoxin dehydrogenase activity IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010586 miRNA metabolic process IEP HCCA
BP GO:0010587 miRNA catabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016572 histone phosphorylation IEP HCCA
CC GO:0016602 CCAAT-binding factor complex IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0018455 alcohol dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0019255 glucose 1-phosphate metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019747 regulation of isoprenoid metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0023052 signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034661 ncRNA catabolic process IEP HCCA
CC GO:0034702 ion channel complex IEP HCCA
CC GO:0034703 cation channel complex IEP HCCA
CC GO:0034705 potassium channel complex IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
CC GO:0035101 FACT complex IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0035966 response to topologically incorrect protein IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
CC GO:0043073 germ cell nucleus IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
BP GO:0046349 amino sugar biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048316 seed development IEP HCCA
MF GO:0048487 beta-tubulin binding IEP HCCA
BP GO:0051211 anisotropic cell growth IEP HCCA
BP GO:0051445 regulation of meiotic cell cycle IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051788 response to misfolded protein IEP HCCA
BP GO:0055047 generative cell mitosis IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0061983 meiosis II cell cycle process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070548 L-glutamine aminotransferase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0080054 low-affinity nitrate transmembrane transporter activity IEP HCCA
BP GO:0080129 proteasome core complex assembly IEP HCCA
BP GO:0090068 positive regulation of cell cycle process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0140014 mitotic nuclear division IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901989 positive regulation of cell cycle phase transition IEP HCCA
BP GO:1901992 positive regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1902930 regulation of alcohol biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR024550 TFIIEa/SarR/Rpc3_HTH_dom 45 111
PLAZA 3.0 Dicots AT4G20340