AT4G21585

Description : endonuclease 4

Gene families : OG_01_0001303 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001303_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G21585
Cluster	HCCA: Cluster_164

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006308	DNA catabolic process	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006351	transcription, DNA-templated	IEP	HCCA
BP	GO:0006352	DNA-templated transcription, initiation	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006505	GPI anchor metabolic process	IEP	HCCA
BP	GO:0006506	GPI anchor biosynthetic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010332	response to gamma radiation	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0031048	heterochromatin assembly by small RNA	IEP	HCCA
BP	GO:0031507	heterochromatin assembly	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
BP	GO:0040029	regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003154	S1/P1nuclease	25	291

External Links

PLAZA 3.0 Dicots	AT4G21585

AT4G21585

Expression Profile

Co-expression Networks

Functional Annotation