1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT4G23460

AT4G23460


Description : Adaptin family protein


Gene families : OG_01_0003429 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003429_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G23460
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Cre11.g478156 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g25810.1 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_2460V3.1 No alias Adaptin family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_19340V3.1 No alias Adaptin family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_13218.1 No alias large subunit beta of AP-2 cargo adaptor complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
MF GO:0030276 clathrin binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000919 cell plate assembly IEP HCCA
MF GO:0002020 protease binding IEP HCCA
BP GO:0002832 negative regulation of response to biotic stimulus IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005384 manganese ion transmembrane transporter activity IEP HCCA
MF GO:0005388 P-type calcium transporter activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005884 actin filament IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 ion transport IEP HCCA
BP GO:0006812 cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006816 calcium ion transport IEP HCCA
BP GO:0006828 manganese ion transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006892 post-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006896 Golgi to vacuole transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006898 receptor-mediated endocytosis IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008324 cation transmembrane transporter activity IEP HCCA
CC GO:0009504 cell plate IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010112 regulation of systemic acquired resistance IEP HCCA
BP GO:0010113 negative regulation of systemic acquired resistance IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0010191 mucilage metabolic process IEP HCCA
BP GO:0010192 mucilage biosynthetic process IEP HCCA
BP GO:0010235 guard mother cell cytokinesis IEP HCCA
BP GO:0010247 detection of phosphate ion IEP HCCA
BP GO:0010337 regulation of salicylic acid metabolic process IEP HCCA
CC GO:0012505 endomembrane system IEP HCCA
MF GO:0015085 calcium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015410 ABC-type manganese transporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
MF GO:0019209 kinase activator activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019789 SUMO transferase activity IEP HCCA
MF GO:0019829 ATPase-coupled cation transmembrane transporter activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030139 endocytic vesicle IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030295 protein kinase activator activity IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0032102 negative regulation of response to external stimulus IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0042149 cellular response to glucose starvation IEP HCCA
BP GO:0042330 taxis IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
CC GO:0045334 clathrin-coated endocytic vesicle IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048354 mucilage biosynthetic process involved in seed coat development IEP HCCA
BP GO:0048359 mucilage metabolic process involved in seed coat development IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0055071 manganese ion homeostasis IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072583 clathrin-dependent endocytosis IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0080119 ER body organization IEP HCCA
BP GO:0090352 regulation of nitrate assimilation IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
BP GO:1903314 regulation of nitrogen cycle metabolic process IEP HCCA
BP GO:2000070 regulation of response to water deprivation IEP HCCA
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 15 533
IPR015151 B-adaptin_app_sub_C 782 890
IPR008152 Clathrin_a/b/g-adaptin_app_Ig 669 771
PLAZA 3.0 Dicots AT4G23460