AT4G23820


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000360 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000360_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G23820
Cluster HCCA: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
AT1G19170 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_14240V3.1 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
Type GO Term Name Evidence Source
MF GO:0000036 acyl carrier activity IEP HCCA
BP GO:0000038 very long-chain fatty acid metabolic process IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP HCCA
MF GO:0004029 aldehyde dehydrogenase (NAD+) activity IEP HCCA
MF GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP HCCA
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004675 transmembrane receptor protein serine/threonine kinase activity IEP HCCA
MF GO:0004860 protein kinase inhibitor activity IEP HCCA
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP HCCA
CC GO:0009331 glycerol-3-phosphate dehydrogenase complex IEP HCCA
BP GO:0009413 response to flooding IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
CC GO:0009531 secondary cell wall IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009739 response to gibberellin IEP HCCA
BP GO:0009753 response to jasmonic acid IEP HCCA
BP GO:0009800 cinnamic acid biosynthetic process IEP HCCA
BP GO:0009803 cinnamic acid metabolic process IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0009914 hormone transport IEP HCCA
BP GO:0009926 auxin polar transport IEP HCCA
BP GO:0009959 negative gravitropism IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010025 wax biosynthetic process IEP HCCA
BP GO:0010143 cutin biosynthetic process IEP HCCA
BP GO:0010166 wax metabolic process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0010218 response to far red light IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0015645 fatty acid ligase activity IEP HCCA
BP GO:0016098 monoterpenoid metabolic process IEP HCCA
BP GO:0016099 monoterpenoid biosynthetic process IEP HCCA
MF GO:0016297 acyl-[acyl-carrier-protein] hydrolase activity IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0018685 alkane 1-monooxygenase activity IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0019210 kinase inhibitor activity IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0031957 very long-chain fatty acid-CoA ligase activity IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
MF GO:0034007 S-linalool synthase activity IEP HCCA
MF GO:0034768 (E)-beta-ocimene synthase activity IEP HCCA
BP GO:0042335 cuticle development IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0042761 very long-chain fatty acid biosynthetic process IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0043446 cellular alkane metabolic process IEP HCCA
BP GO:0043447 alkane biosynthetic process IEP HCCA
BP GO:0043692 monoterpene metabolic process IEP HCCA
BP GO:0043693 monoterpene biosynthetic process IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044347 cell wall polysaccharide catabolic process IEP HCCA
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
CC GO:0045298 tubulin complex IEP HCCA
BP GO:0045493 xylan catabolic process IEP HCCA
BP GO:0046246 terpene biosynthetic process IEP HCCA
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP HCCA
MF GO:0046577 long-chain-alcohol oxidase activity IEP HCCA
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0050551 myrcene synthase activity IEP HCCA
BP GO:0050829 defense response to Gram-negative bacterium IEP HCCA
MF GO:0051192 prosthetic group binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051513 regulation of monopolar cell growth IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
MF GO:0052722 fatty acid in-chain hydroxylase activity IEP HCCA
BP GO:0060918 auxin transport IEP HCCA
BP GO:0070542 response to fatty acid IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
MF GO:0071771 aldehyde decarbonylase activity IEP HCCA
BP GO:0080027 response to herbivore IEP HCCA
MF GO:0080054 low-affinity nitrate transmembrane transporter activity IEP HCCA
MF GO:0080176 xyloglucan 1,6-alpha-xylosidase activity IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
MF GO:0097599 xylanase activity IEP HCCA
MF GO:0140414 phosphopantetheine-dependent carrier activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901568 fatty acid derivative metabolic process IEP HCCA
BP GO:1901570 fatty acid derivative biosynthetic process IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:2000038 regulation of stomatal complex development IEP HCCA
BP GO:2000122 negative regulation of stomatal complex development IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 137 417
PLAZA 3.0 Dicots AT4G23820