AT4G27690

Description : vacuolar protein sorting 26B

Gene families : OG_01_0002027 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G27690
Cluster	HCCA: Cluster_145

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cre09.g414200	No alias	Vesicle trafficking.endomembrane trafficking.protein...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	ISS	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	RCA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	ISS	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0000913	preprophase band assembly	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
BP	GO:0002213	defense response to insect	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004629	phospholipase C activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004693	cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005677	chromatin silencing complex	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genetic imprinting	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006635	fatty acid beta-oxidation	IEP	HCCA
BP	GO:0006808	regulation of nitrogen utilization	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0008156	negative regulation of DNA replication	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
MF	GO:0008878	glucose-1-phosphate adenylyltransferase activity	IEP	HCCA
BP	GO:0009062	fatty acid catabolic process	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009967	positive regulation of signal transduction	IEP	HCCA
BP	GO:0010082	regulation of root meristem growth	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
CC	GO:0010170	glucose-1-phosphate adenylyltransferase complex	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010647	positive regulation of cell communication	IEP	HCCA
BP	GO:0010948	negative regulation of cell cycle process	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
BP	GO:0016925	protein sumoylation	IEP	HCCA
BP	GO:0019395	fatty acid oxidation	IEP	HCCA
MF	GO:0019789	SUMO transferase activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0023056	positive regulation of signaling	IEP	HCCA
BP	GO:0030258	lipid modification	IEP	HCCA
BP	GO:0030865	cortical cytoskeleton organization	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
BP	GO:0032875	regulation of DNA endoreduplication	IEP	HCCA
BP	GO:0032876	negative regulation of DNA endoreduplication	IEP	HCCA
BP	GO:0034440	lipid oxidation	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
CC	GO:0043076	megasporocyte nucleus	IEP	HCCA
CC	GO:0043078	polar nucleus	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0045787	positive regulation of cell cycle	IEP	HCCA
BP	GO:0045931	positive regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0048468	cell development	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048584	positive regulation of response to stimulus	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
MF	GO:0051879	Hsp90 protein binding	IEP	HCCA
BP	GO:0060249	anatomical structure homeostasis	IEP	HCCA
BP	GO:0060250	germ-line stem-cell niche homeostasis	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
MF	GO:0070566	adenylyltransferase activity	IEP	HCCA
BP	GO:0071514	genetic imprinting	IEP	HCCA
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	HCCA
BP	GO:0080036	regulation of cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0080038	positive regulation of cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0080147	root hair cell development	IEP	HCCA
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097472	cyclin-dependent protein kinase activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1902503	adenylyltransferase complex	IEP	HCCA
BP	GO:2000014	regulation of endosperm development	IEP	HCCA
BP	GO:2000104	negative regulation of DNA-dependent DNA replication	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028934	Vps26-related	8	283

External Links

PLAZA 3.0 Dicots	AT4G27690

AT4G27690

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation