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  5. AT4G28690

AT4G28690


Description : BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 13 (TAIR:AT2G20310.1); Has 455 Blast hits to 438 proteins in 127 species: Archae - 0; Bacteria - 18; Metazoa - 148; Fungi - 91; Plants - 136; Viruses - 3; Other Eukaryotes - 59 (source: NCBI BLink).


Gene families : OG_01_0000792 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000792_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G28690
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT2G20310 No alias RPM1 interacting protein 13 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000793 condensed chromosome IEP HCCA
CC GO:0000794 condensed nuclear chromosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003691 double-stranded telomeric DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004140 dephospho-CoA kinase activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
CC GO:0005811 lipid droplet IEP HCCA
BP GO:0006580 ethanolamine metabolic process IEP HCCA
BP GO:0006617 SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0008970 phospholipase A1 activity IEP HCCA
BP GO:0009554 megasporogenesis IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010219 regulation of vernalization response IEP HCCA
BP GO:0010220 positive regulation of vernalization response IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0010265 SCF complex assembly IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
BP GO:0015937 coenzyme A biosynthetic process IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
BP GO:0030308 negative regulation of cell growth IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0033866 nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034030 ribonucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034033 purine nucleoside bisphosphate biosynthetic process IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034599 cellular response to oxidative stress IEP HCCA
BP GO:0034614 cellular response to reactive oxygen species IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
BP GO:0042439 ethanolamine-containing compound metabolic process IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0043047 single-stranded telomeric DNA binding IEP HCCA
BP GO:0045116 protein neddylation IEP HCCA
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0045926 negative regulation of growth IEP HCCA
MF GO:0047714 galactolipase activity IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0052638 indole-3-butyrate beta-glucosyltransferase activity IEP HCCA
BP GO:0070301 cellular response to hydrogen peroxide IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0071472 cellular response to salt stress IEP HCCA
BP GO:0071474 cellular hyperosmotic response IEP HCCA
BP GO:0071475 cellular hyperosmotic salinity response IEP HCCA
BP GO:0080024 indolebutyric acid metabolic process IEP HCCA
BP GO:0090332 stomatal closure IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
MF GO:0098847 sequence-specific single stranded DNA binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901160 primary amino compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT4G28690