AT4G30700

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0000019 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G30700
Cluster	HCCA: Cluster_218

Target	Alias	Description	ECC score	Gene Family Method
AT3G25970	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G18520	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G39530	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_930V3.1	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	IMP	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IMP	Interproscan
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IMP	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
BP	GO:0010440	stomatal lineage progression	IEP	HCCA
MF	GO:0015296	anion:cation symporter activity	IEP	HCCA
MF	GO:0015377	cation:chloride symporter activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	659	782
IPR002885	Pentatricopeptide_repeat	288	316
IPR002885	Pentatricopeptide_repeat	187	215
IPR002885	Pentatricopeptide_repeat	160	183
IPR002885	Pentatricopeptide_repeat	387	431
IPR002885	Pentatricopeptide_repeat	484	531

External Links

PLAZA 3.0 Dicots	AT4G30700

AT4G30700

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation