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  5. AT4G31460

AT4G31460


Description : Ribosomal L28 family


Gene families : OG_01_0007102 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G31460
Cluster HCCA: Cluster_39


Type GO Term Name Evidence Source
MF GO:0003735
structural constituent of ribosome
 ISS Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0004152 dihydroorotate dehydrogenase activity IEP HCCA
MF GO:0004395 hexaprenyldihydroxybenzoate methyltransferase activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004774 succinate-CoA ligase activity IEP HCCA
MF GO:0004776 succinate-CoA ligase (GDP-forming) activity IEP HCCA
MF GO:0005253 anion channel activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005740 mitochondrial envelope IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006354 DNA-templated transcription, elongation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006743 ubiquinone metabolic process IEP HCCA
BP GO:0006744 ubiquinone biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008308 voltage-gated anion channel activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
MF GO:0010420 3,4-dihydroxy-5-polyprenylbenzoic acid O-methyltransferase activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016878 acid-thiol ligase activity IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034406 cell wall beta-glucan metabolic process IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0060688 regulation of morphogenesis of a branching structure IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0090506 axillary shoot meristem initiation IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1905428 regulation of plant organ formation IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000032 regulation of secondary shoot formation IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 45 103
PLAZA 3.0 Dicots AT4G31460