AT4G33560

Description : Wound-responsive family protein

Gene families : OG_01_0000021 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G33560
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AT1G48400	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42720	No alias	FBD, F-box, Skp2-like and Leucine Rich Repeat domains...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G54160	No alias	RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58860	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58880	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58920	No alias	F-box/RNI-like superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58960	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59160	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59230	No alias	RNI-like superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59240	No alias	RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G62440	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G00320	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G15620	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G25860	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G35926	No alias	Protein with RNI-like/FBD-like domains	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38396	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41830	No alias	RNI-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	RCA	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009944	polarity specification of adaxial/abaxial axis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010014	meristem initiation	RCA	Interproscan
BP	GO:0010075	regulation of meristem growth	RCA	Interproscan
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0004069	L-aspartate:2-oxoglutarate aminotransferase activity	IEP	HCCA
MF	GO:0004737	pyruvate decarboxylase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0009061	anaerobic respiration	IEP	HCCA
BP	GO:0009692	ethylene metabolic process	IEP	HCCA
BP	GO:0009693	ethylene biosynthetic process	IEP	HCCA
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	HCCA
BP	GO:0009823	cytokinin catabolic process	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009956	radial pattern formation	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	HCCA
MF	GO:0018858	benzoate-CoA ligase activity	IEP	HCCA
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
BP	GO:0034059	response to anoxia	IEP	HCCA
BP	GO:0040019	positive regulation of embryonic development	IEP	HCCA
BP	GO:0042447	hormone catabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043449	cellular alkene metabolic process	IEP	HCCA
BP	GO:0043450	alkene biosynthetic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0045995	regulation of embryonic development	IEP	HCCA
BP	GO:0048479	style development	IEP	HCCA
BP	GO:0048480	stigma development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0048859	formation of anatomical boundary	IEP	HCCA
MF	GO:0051749	indole acetic acid carboxyl methyltransferase activity	IEP	HCCA
BP	GO:0060771	phyllotactic patterning	IEP	HCCA
BP	GO:0060772	leaf phyllotactic patterning	IEP	HCCA
BP	GO:0060774	auxin mediated signaling pathway involved in phyllotactic patterning	IEP	HCCA
BP	GO:0071398	cellular response to fatty acid	IEP	HCCA
BP	GO:0071731	response to nitric oxide	IEP	HCCA
BP	GO:0071732	cellular response to nitric oxide	IEP	HCCA
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IEP	HCCA
BP	GO:0090691	formation of plant organ boundary	IEP	HCCA
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	HCCA
BP	GO:0120252	hydrocarbon metabolic process	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1900673	olefin metabolic process	IEP	HCCA
BP	GO:1900674	olefin biosynthetic process	IEP	HCCA
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	HCCA
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022251	DUF3774_wound-induced	11	90

External Links

PLAZA 3.0 Dicots	AT4G33560

AT4G33560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation