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AT4G37880


Description : LisH/CRA/RING-U-box domains-containing protein


Gene families : OG_01_0001293 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001293_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G37880
Cluster HCCA: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
Zci_04580.1 No alias ubiquitin ligase component GID2 of GID ubiquitination complex 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
CC GO:0000325 plant-type vacuole IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004105 choline-phosphate cytidylyltransferase activity IEP HCCA
MF GO:0004470 malic enzyme activity IEP HCCA
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004846 urate oxidase activity IEP HCCA
MF GO:0005249 voltage-gated potassium channel activity IEP HCCA
MF GO:0005267 potassium channel activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005771 multivesicular body IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
BP GO:0006108 malate metabolic process IEP HCCA
BP GO:0006144 purine nucleobase metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006656 phosphatidylcholine biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006812 cation transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006892 post-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006896 Golgi to vacuole transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007041 lysosomal transport IEP HCCA
CC GO:0008076 voltage-gated potassium channel complex IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008333 endosome to lysosome transport IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009660 amyloplast organization IEP HCCA
BP GO:0009785 blue light signaling pathway IEP HCCA
BP GO:0009958 positive gravitropism IEP HCCA
BP GO:0009959 negative gravitropism IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016652 oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016663 oxidoreductase activity, acting on other nitrogenous compounds as donors, oxygen as acceptor IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022843 voltage-gated cation channel activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030140 trans-Golgi network transport vesicle IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030522 intracellular receptor signaling pathway IEP HCCA
CC GO:0030904 retromer complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031371 ubiquitin conjugating enzyme complex IEP HCCA
CC GO:0031372 UBC13-MMS2 complex IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
CC GO:0031982 vesicle IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0034613 cellular protein localization IEP HCCA
CC GO:0034702 ion channel complex IEP HCCA
CC GO:0034703 cation channel complex IEP HCCA
CC GO:0034705 potassium channel complex IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0040007 growth IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0043132 NAD transport IEP HCCA
BP GO:0043624 cellular protein complex disassembly IEP HCCA
BP GO:0044375 regulation of peroxisome size IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046470 phosphatidylcholine metabolic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055063 sulfate ion homeostasis IEP HCCA
BP GO:0055081 anion homeostasis IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071214 cellular response to abiotic stimulus IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071483 cellular response to blue light IEP HCCA
BP GO:0071484 cellular response to light intensity IEP HCCA
BP GO:0071486 cellular response to high light intensity IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072505 divalent inorganic anion homeostasis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:0104004 cellular response to environmental stimulus IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR024964 CTLH/CRA 150 290
IPR027370 Znf-RING_LisH 330 372
PLAZA 3.0 Dicots AT4G37880