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Description : RNA-binding (RRM/RBD/RNP motifs) family protein
Gene families : OG_01_0001839 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001839_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT5G03480 | |
| Cluster | HCCA: Cluster_218 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G24420 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT5G03495 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IDA | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004356 | glutamate-ammonia ligase activity | IEP | HCCA |
| MF | GO:0004396 | hexokinase activity | IEP | HCCA |
| MF | GO:0004439 | phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | IEP | HCCA |
| MF | GO:0004448 | isocitrate dehydrogenase activity | IEP | HCCA |
| MF | GO:0004449 | isocitrate dehydrogenase (NAD+) activity | IEP | HCCA |
| MF | GO:0004743 | pyruvate kinase activity | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| CC | GO:0005795 | Golgi stack | IEP | HCCA |
| BP | GO:0006066 | alcohol metabolic process | IEP | HCCA |
| BP | GO:0006099 | tricarboxylic acid cycle | IEP | HCCA |
| BP | GO:0006102 | isocitrate metabolic process | IEP | HCCA |
| BP | GO:0009830 | cell wall modification involved in abscission | IEP | HCCA |
| MF | GO:0016211 | ammonia ligase activity | IEP | HCCA |
| MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | HCCA |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | HCCA |
| BP | GO:0032957 | inositol trisphosphate metabolic process | IEP | HCCA |
| MF | GO:0034593 | phosphatidylinositol bisphosphate phosphatase activity | IEP | HCCA |
| MF | GO:0034595 | phosphatidylinositol phosphate 5-phosphatase activity | IEP | HCCA |
| BP | GO:0044277 | cell wall disassembly | IEP | HCCA |
| BP | GO:0046164 | alcohol catabolic process | IEP | HCCA |
| BP | GO:0046174 | polyol catabolic process | IEP | HCCA |
| BP | GO:0046838 | phosphorylated carbohydrate dephosphorylation | IEP | HCCA |
| BP | GO:0046855 | inositol phosphate dephosphorylation | IEP | HCCA |
| MF | GO:0052866 | phosphatidylinositol phosphate phosphatase activity | IEP | HCCA |
| BP | GO:0071545 | inositol phosphate catabolic process | IEP | HCCA |
| BP | GO:0072350 | tricarboxylic acid metabolic process | IEP | HCCA |
| MF | GO:0106019 | phosphatidylinositol-4,5-bisphosphate phosphatase activity | IEP | HCCA |
| BP | GO:1902652 | secondary alcohol metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| PLAZA 3.0 Dicots | AT5G03480 |