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  5. AT5G04810

AT5G04810


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0005375 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005375_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G04810
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Mp1g25160.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_280V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_07747.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000304 response to singlet oxygen IEP HCCA
BP GO:0000373 Group II intron splicing IEP HCCA
MF GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0003984 acetolactate synthase activity IEP HCCA
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP HCCA
MF GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity IEP HCCA
MF GO:0004709 MAP kinase kinase kinase activity IEP HCCA
MF GO:0004737 pyruvate decarboxylase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005388 P-type calcium transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006000 fructose metabolic process IEP HCCA
BP GO:0006002 fructose 6-phosphate metabolic process IEP HCCA
BP GO:0006003 fructose 2,6-bisphosphate metabolic process IEP HCCA
BP GO:0006351 transcription, DNA-templated IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
BP GO:0006882 cellular zinc ion homeostasis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008308 voltage-gated anion channel activity IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
MF GO:0008886 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009765 photosynthesis, light harvesting IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0009959 negative gravitropism IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010161 red light signaling pathway IEP HCCA
BP GO:0010187 negative regulation of seed germination IEP HCCA
BP GO:0010239 chloroplast mRNA processing IEP HCCA
MF GO:0010313 phytochrome binding IEP HCCA
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP HCCA
BP GO:0010422 regulation of brassinosteroid biosynthetic process IEP HCCA
BP GO:0010423 negative regulation of brassinosteroid biosynthetic process IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
BP GO:0010894 negative regulation of steroid biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016411 acylglycerol O-acyltransferase activity IEP HCCA
MF GO:0016695 oxidoreductase activity, acting on hydrogen as donor IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016744 transketolase or transaldolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
BP GO:0019218 regulation of steroid metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032350 regulation of hormone metabolic process IEP HCCA
BP GO:0032351 negative regulation of hormone metabolic process IEP HCCA
BP GO:0032353 negative regulation of hormone biosynthetic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033354 chlorophyll cycle IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0036473 cell death in response to oxidative stress IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
MF GO:0042171 lysophosphatidic acid acyltransferase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043609 regulation of carbon utilization IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045038 protein import into chloroplast thylakoid membrane IEP HCCA
BP GO:0045833 negative regulation of lipid metabolic process IEP HCCA
BP GO:0045939 negative regulation of steroid metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046885 regulation of hormone biosynthetic process IEP HCCA
BP GO:0046890 regulation of lipid biosynthetic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0046995 oxidoreductase activity, acting on hydrogen as donor, with other known acceptors IEP HCCA
MF GO:0047627 adenylylsulfatase activity IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
MF GO:0050308 sugar-phosphatase activity IEP HCCA
MF GO:0050454 coenzyme F420 hydrogenase activity IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050810 regulation of steroid biosynthetic process IEP HCCA
BP GO:0051055 negative regulation of lipid biosynthetic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051341 regulation of oxidoreductase activity IEP HCCA
BP GO:0051353 positive regulation of oxidoreductase activity IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0055069 zinc ion homeostasis IEP HCCA
BP GO:0055081 anion homeostasis IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0071491 cellular response to red light IEP HCCA
MF GO:0071617 lysophospholipid acyltransferase activity IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090030 regulation of steroid hormone biosynthetic process IEP HCCA
BP GO:0090032 negative regulation of steroid hormone biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090342 regulation of cell aging IEP HCCA
MF GO:0090415 7-hydroxymethyl chlorophyll a reductase activity IEP HCCA
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901259 chloroplast rRNA processing IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902551 regulation of catalase activity IEP HCCA
BP GO:1902553 positive regulation of catalase activity IEP HCCA
BP GO:2000468 regulation of peroxidase activity IEP HCCA
BP GO:2000470 positive regulation of peroxidase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 416 445
IPR002885 Pentatricopeptide_repeat 314 340
IPR002885 Pentatricopeptide_repeat 451 480
IPR002885 Pentatricopeptide_repeat 728 776
IPR002885 Pentatricopeptide_repeat 622 670
IPR002885 Pentatricopeptide_repeat 482 531
IPR002885 Pentatricopeptide_repeat 343 391
IPR002885 Pentatricopeptide_repeat 788 841
IPR002885 Pentatricopeptide_repeat 541 596
IPR002885 Pentatricopeptide_repeat 689 721
IPR000504 RRM_dom 167 236
PLAZA 3.0 Dicots AT5G04810