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  5. AT5G08290

AT5G08290


Description : mRNA splicing factor, thioredoxin-like U5 snRNP


Gene families : OG_01_0006845 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006845_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G08290
Cluster HCCA: Cluster_123


Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis RCA Interproscan
MF GO:0003824 catalytic activity ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005681 spliceosomal complex ISS Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0006623 protein targeting to vacuole RCA Interproscan
BP GO:0007030 Golgi organization RCA Interproscan
BP GO:0007033 vacuole organization RCA Interproscan
BP GO:0010150 leaf senescence IEP Interproscan
BP GO:0016049 cell growth RCA Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
BP GO:0016197 endosomal transport RCA Interproscan
BP GO:0048193 Golgi vesicle transport RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000103 sulfate assimilation IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005876 spindle microtubule IEP HCCA
CC GO:0005881 cytoplasmic microtubule IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007000 nucleolus organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007530 sex determination IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
CC GO:0009574 preprophase band IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
CC GO:0010005 cortical microtubule, transverse to long axis IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042330 taxis IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
BP GO:0051211 anisotropic cell growth IEP HCCA
CC GO:0055028 cortical microtubule IEP HCCA
BP GO:0062197 cellular response to chemical stress IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0071472 cellular response to salt stress IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
InterPro domains Description Start Stop
IPR004123 Dim1 4 136
PLAZA 3.0 Dicots AT5G08290