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  5. AT5G09500

AT5G09500


Description : Ribosomal protein S19 family protein


Gene families : OG_01_0000618 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G09500
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G33850 No alias Ribosomal protein S19 family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G09490 No alias Ribosomal protein S19 family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G43640 No alias Ribosomal protein S19 family protein 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre08.g360900 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g15000.1 No alias component RPS15 of SSU proteome 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_9180V3.1 No alias Ribosomal protein S19 family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_15250V3.1 No alias Ribosomal protein S19 family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
CC GO:0022627 cytosolic small ribosomal subunit ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0004871 obsolete signal transducer activity IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006857 oligopeptide transport IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009786 regulation of asymmetric cell division IEP HCCA
MF GO:0015089 high-affinity copper ion transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity IEP HCCA
BP GO:0015695 organic cation transport IEP HCCA
BP GO:0015833 peptide transport IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
BP GO:0042886 amide transport IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
InterPro domains Description Start Stop
IPR002222 Ribosomal_S19 48 133
PLAZA 3.0 Dicots AT5G09500