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  5. AT5G13620

AT5G13620


Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).


Gene families : OG_01_0003531 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003531_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G13620
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT1G64870 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G11220 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G24355 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP HCCA
BP GO:0006885 regulation of pH IEP HCCA
BP GO:0007035 vacuolar acidification IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
BP GO:0010023 proanthocyanidin biosynthetic process IEP HCCA
BP GO:0010231 maintenance of seed dormancy IEP HCCA
MF GO:0015662 P-type ion transporter activity IEP HCCA
BP GO:0018958 phenol-containing compound metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled cation transmembrane transporter activity IEP HCCA
MF GO:0022853 active ion transmembrane transporter activity IEP HCCA
BP GO:0030004 cellular monovalent inorganic cation homeostasis IEP HCCA
BP GO:0030641 regulation of cellular pH IEP HCCA
BP GO:0036294 cellular response to decreased oxygen levels IEP HCCA
BP GO:0045851 pH reduction IEP HCCA
BP GO:0046189 phenol-containing compound biosynthetic process IEP HCCA
BP GO:0051452 intracellular pH reduction IEP HCCA
BP GO:0051453 regulation of intracellular pH IEP HCCA
BP GO:0055067 monovalent inorganic cation homeostasis IEP HCCA
BP GO:0071453 cellular response to oxygen levels IEP HCCA
BP GO:0071456 cellular response to hypoxia IEP HCCA
BP GO:0097437 maintenance of dormancy IEP HCCA
MF GO:0140358 P-type transmembrane transporter activity IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT5G13620