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  5. AT5G16040

AT5G16040


Description : Regulator of chromosome condensation (RCC1) family protein


Gene families : OG_01_0008725 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G16040
Cluster HCCA: Cluster_133


Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001934 positive regulation of protein phosphorylation IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004676 3-phosphoinositide-dependent protein kinase activity IEP HCCA
MF GO:0004845 uracil phosphoribosyltransferase activity IEP HCCA
MF GO:0004849 uridine kinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006109 regulation of carbohydrate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006222 UMP biosynthetic process IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006520 cellular amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0008652 cellular amino acid biosynthetic process IEP HCCA
BP GO:0008655 pyrimidine-containing compound salvage IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009174 pyrimidine ribonucleoside monophosphate biosynthetic process IEP HCCA
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010026 trichome differentiation IEP HCCA
BP GO:0010138 pyrimidine ribonucleotide salvage IEP HCCA
BP GO:0010562 positive regulation of phosphorus metabolic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010675 regulation of cellular carbohydrate metabolic process IEP HCCA
MF GO:0015562 efflux transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0032262 pyrimidine nucleotide salvage IEP HCCA
BP GO:0032270 positive regulation of cellular protein metabolic process IEP HCCA
BP GO:0032881 regulation of polysaccharide metabolic process IEP HCCA
CC GO:0033186 CAF-1 complex IEP HCCA
BP GO:0033674 positive regulation of kinase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042327 positive regulation of phosphorylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043173 nucleotide salvage IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044206 UMP salvage IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045860 positive regulation of protein kinase activity IEP HCCA
BP GO:0045937 positive regulation of phosphate metabolic process IEP HCCA
BP GO:0046049 UMP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051347 positive regulation of transferase activity IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
MF GO:0070300 phosphatidic acid binding IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:2000904 regulation of starch metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 110 165
IPR000408 Reg_chr_condens 266 317
IPR000408 Reg_chr_condens 320 385
IPR000408 Reg_chr_condens 56 106
IPR000408 Reg_chr_condens 7 53
IPR000408 Reg_chr_condens 214 263
PLAZA 3.0 Dicots AT5G16040