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  5. AT5G18475

AT5G18475


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000212 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G18475
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AT1G02060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G11690 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0003002 regionalization IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
CC GO:0009574 preprophase band IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010305 leaf vascular tissue pattern formation IEP HCCA
MF GO:0010385 double-stranded methylated DNA binding IEP HCCA
BP GO:0010540 basipetal auxin transport IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043966 histone H3 acetylation IEP HCCA
BP GO:0043971 histone H3-K18 acetylation IEP HCCA
BP GO:0043972 histone H3-K23 acetylation IEP HCCA
BP GO:0044030 regulation of DNA methylation IEP HCCA
BP GO:0044154 histone H3-K14 acetylation IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 403 434
IPR002885 Pentatricopeptide_repeat 194 242
IPR002885 Pentatricopeptide_repeat 337 384
IPR002885 Pentatricopeptide_repeat 266 315
PLAZA 3.0 Dicots AT5G18475