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  5. AT5G21140

AT5G21140


Description : embryo defective 1379


Gene families : OG_01_0008086 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G21140
Cluster HCCA: Cluster_184


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
MF GO:0000404 heteroduplex DNA loop binding IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0003886 DNA (cytosine-5-)-methyltransferase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004609 phosphatidylserine decarboxylase activity IEP HCCA
CC GO:0005945 6-phosphofructokinase complex IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
MF GO:0009008 DNA-methyltransferase activity IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009830 cell wall modification involved in abscission IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010047 fruit dehiscence IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010528 regulation of transposition IEP HCCA
BP GO:0010529 negative regulation of transposition IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031507 heterochromatin assembly IEP HCCA
MF GO:0032135 DNA insertion or deletion binding IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
CC GO:0042645 mitochondrial nucleoid IEP HCCA
BP GO:0043570 maintenance of DNA repeat elements IEP HCCA
BP GO:0044277 cell wall disassembly IEP HCCA
BP GO:0045490 pectin catabolic process IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
MF GO:0047268 galactinol-raffinose galactosyltransferase activity IEP HCCA
BP GO:0048446 petal morphogenesis IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0051131 chaperone-mediated protein complex assembly IEP HCCA
BP GO:0051260 protein homooligomerization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0070407 oxidation-dependent protein catabolic process IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
CC GO:1990391 DNA repair complex IEP HCCA
InterPro domains Description Start Stop
IPR011513 Nse1 8 186
IPR014857 Znf_RING-like 198 240
PLAZA 3.0 Dicots AT5G21140