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  5. AT5G23110

AT5G23110


Description : Zinc finger, C3HC4 type (RING finger) family protein


Gene families : OG_01_0001670 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001670_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G23110
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cre01.g044850 No alias No description available 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp5g01480.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_15860V3.1 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_15920.3 No alias no hits & (original description: none) 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000059 obsolete protein import into nucleus, docking IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
CC GO:0000932 P-body IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin assembly IEP HCCA
BP GO:0006349 regulation of gene expression by genetic imprinting IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006928 movement of cell or subcellular component IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007032 endosome organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009660 amyloplast organization IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0009959 negative gravitropism IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010029 regulation of seed germination IEP HCCA
BP GO:0010030 positive regulation of seed germination IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
BP GO:0015865 purine nucleotide transport IEP HCCA
BP GO:0015868 purine ribonucleotide transport IEP HCCA
BP GO:0015916 fatty-acyl-CoA transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
MF GO:0018024 histone-lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022610 biological adhesion IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
MF GO:0030742 GTP-dependent protein binding IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034249 negative regulation of cellular amide metabolic process IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034508 centromere complex assembly IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0035194 post-transcriptional gene silencing by RNA IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0035278 miRNA mediated inhibition of translation IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0040029 regulation of gene expression, epigenetic IEP HCCA
BP GO:0040033 negative regulation of translation, ncRNA-mediated IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
MF GO:0042800 histone methyltransferase activity (H3-K4 specific) IEP HCCA
CC GO:0043076 megasporocyte nucleus IEP HCCA
CC GO:0043078 polar nucleus IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045974 regulation of translation, ncRNA-mediated IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0046861 glyoxysomal membrane IEP HCCA
BP GO:0048015 phosphatidylinositol-mediated signaling IEP HCCA
BP GO:0048017 inositol lipid-mediated signaling IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048281 inflorescence morphogenesis IEP HCCA
BP GO:0048283 indeterminate inflorescence morphogenesis IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048440 carpel development IEP HCCA
BP GO:0048467 gynoecium development IEP HCCA
BP GO:0048468 cell development IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048571 long-day photoperiodism IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048574 long-day photoperiodism, flowering IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048859 formation of anatomical boundary IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050994 regulation of lipid catabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051177 meiotic sister chromatid cohesion IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051503 adenine nucleotide transport IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0052545 callose localization IEP HCCA
BP GO:0055047 generative cell mitosis IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0071514 genetic imprinting IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0080092 regulation of pollen tube growth IEP HCCA
BP GO:0090213 regulation of radial pattern formation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090436 leaf pavement cell development IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
BP GO:0090691 formation of plant organ boundary IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:0140014 mitotic nuclear division IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:1900140 regulation of seedling development IEP HCCA
BP GO:1901337 thioester transport IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
BP GO:1990064 ground tissue pattern formation IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT5G23110