AT5G23740

Description : ribosomal protein S11-beta

Gene families : OG_01_0001240 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001240_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G23740
Cluster	HCCA: Cluster_134

Target	Alias	Description	ECC score	Gene Family Method
Cre12.g514500	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.32	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g23360.1	No alias	component RPS11 of SSU proteome	0.21	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g10500.1	No alias	component RPS11 of SSU proteome	0.3	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_9600V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.3	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_27980V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.3	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_13690V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.24	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s116_30V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.28	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_15066.1	No alias	component uS17 of SSU proteome	0.23	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
MF	GO:0000036	acyl carrier activity	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
BP	GO:0016925	protein sumoylation	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043628	ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048569	post-embryonic animal organ development	IEP	HCCA
MF	GO:0051192	prosthetic group binding	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071731	response to nitric oxide	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000266	Ribosomal_S17/S11	74	142
IPR032440	Ribosomal_S11_N	4	72

External Links

PLAZA 3.0 Dicots	AT5G23740

AT5G23740

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation