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  5. AT5G37870

AT5G37870


Description : Protein with RING/U-box and TRAF-like domains


Gene families : OG_01_0001230 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001230_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G37870
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT1G66610 No alias TRAF-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G66650 No alias Protein with RING/U-box and TRAF-like domains 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G37910 No alias Protein with RING/U-box and TRAF-like domains 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process ISS Interproscan
BP GO:0007275 multicellular organism development ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005351 carbohydrate:proton symporter activity IEP HCCA
MF GO:0005375 copper ion transmembrane transporter activity IEP HCCA
MF GO:0005402 carbohydrate:cation symporter activity IEP HCCA
CC GO:0005887 integral component of plasma membrane IEP HCCA
BP GO:0006412 translation IEP HCCA
MF GO:0008324 cation transmembrane transporter activity IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0015089 high-affinity copper ion transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015114 phosphate ion transmembrane transporter activity IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015145 monosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity IEP HCCA
BP GO:0015695 organic cation transport IEP HCCA
BP GO:0015749 monosaccharide transmembrane transport IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
BP GO:0034219 carbohydrate transmembrane transport IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
MF GO:0051119 sugar transmembrane transporter activity IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 87 238
PLAZA 3.0 Dicots AT5G37870