AT5G39300

Description : expansin A25

Gene families : OG_01_0000011 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000011_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G39300
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
AT1G12560	No alias	expansin A7	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G62980	No alias	expansin A18	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39260	No alias	expansin A21	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39270	No alias	expansin A22	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G39310	No alias	expansin A24	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g22700.1	No alias	alpha-class expansin	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g28890.1	No alias	alpha-class expansin	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_12000V3.1	No alias	expansin A14	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_19720V3.1	No alias	expansin A1	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_12870V3.1	No alias	expansin A14	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	ISS	Interproscan
BP	GO:0009826	unidimensional cell growth	NAS	Interproscan
BP	GO:0009827	plant-type cell wall modification	None	Extended
BP	GO:0009828	plant-type cell wall loosening	ISS	Interproscan
BP	GO:0009828	plant-type cell wall loosening	NAS	Interproscan
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003848	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	IEP	HCCA
MF	GO:0004029	aldehyde dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0004030	aldehyde dehydrogenase [NAD(P)+] activity	IEP	HCCA
MF	GO:0004031	aldehyde oxidase activity	IEP	HCCA
MF	GO:0004156	dihydropteroate synthase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004564	beta-fructofuranosidase activity	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0004805	trehalose-phosphatase activity	IEP	HCCA
MF	GO:0005355	glucose transmembrane transporter activity	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genetic imprinting	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009957	epidermal cell fate specification	IEP	HCCA
BP	GO:0009960	endosperm development	IEP	HCCA
BP	GO:0009996	negative regulation of cell fate specification	IEP	HCCA
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	HCCA
BP	GO:0010061	regulation of trichoblast fate specification	IEP	HCCA
BP	GO:0010062	negative regulation of trichoblast fate specification	IEP	HCCA
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IEP	HCCA
BP	GO:0010453	regulation of cell fate commitment	IEP	HCCA
BP	GO:0010454	negative regulation of cell fate commitment	IEP	HCCA
BP	GO:0010466	negative regulation of peptidase activity	IEP	HCCA
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	HCCA
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	HCCA
MF	GO:0015149	hexose transmembrane transporter activity	IEP	HCCA
MF	GO:0015152	glucose-6-phosphate transmembrane transporter activity	IEP	HCCA
BP	GO:0015712	hexose phosphate transport	IEP	HCCA
MF	GO:0016623	oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0016778	diphosphotransferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
MF	GO:0018479	benzaldehyde dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0018488	aryl-aldehyde oxidase activity	IEP	HCCA
MF	GO:0019115	benzaldehyde dehydrogenase [NAD(P)+] activity	IEP	HCCA
BP	GO:0030162	regulation of proteolysis	IEP	HCCA
BP	GO:0030656	regulation of vitamin metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042659	regulation of cell fate specification	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
CC	GO:0043076	megasporocyte nucleus	IEP	HCCA
CC	GO:0043078	polar nucleus	IEP	HCCA
MF	GO:0045544	gibberellin 20-oxidase activity	IEP	HCCA
BP	GO:0045596	negative regulation of cell differentiation	IEP	HCCA
BP	GO:0045861	negative regulation of proteolysis	IEP	HCCA
BP	GO:0045912	negative regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0046137	negative regulation of vitamin metabolic process	IEP	HCCA
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	HCCA
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	HCCA
BP	GO:0046688	response to copper ion	IEP	HCCA
BP	GO:0048317	seed morphogenesis	IEP	HCCA
MF	GO:0050362	L-tryptophan:2-oxoglutarate aminotransferase activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0051346	negative regulation of hydrolase activity	IEP	HCCA
BP	GO:0052547	regulation of peptidase activity	IEP	HCCA
BP	GO:0052548	regulation of endopeptidase activity	IEP	HCCA
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	HCCA
MF	GO:0070529	L-tryptophan aminotransferase activity	IEP	HCCA
BP	GO:0071514	genetic imprinting	IEP	HCCA
MF	GO:0080097	L-tryptophan:pyruvate aminotransferase activity	IEP	HCCA
BP	GO:0080113	regulation of seed growth	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1903888	regulation of plant epidermal cell differentiation	IEP	HCCA
BP	GO:1903889	negative regulation of plant epidermal cell differentiation	IEP	HCCA
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	HCCA
BP	GO:2000014	regulation of endosperm development	IEP	HCCA
BP	GO:2000067	regulation of root morphogenesis	IEP	HCCA
BP	GO:2000082	regulation of L-ascorbic acid biosynthetic process	IEP	HCCA
BP	GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009009	RlpA-like_DPBB	74	157
IPR007117	Expansin_CBD	168	245

External Links

PLAZA 3.0 Dicots	AT5G39300

AT5G39300

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation