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  5. AT5G40040

AT5G40040


Description : 60S acidic ribosomal protein family


Gene families : OG_01_0000714 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000714_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G40040
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT2G27710 No alias 60S acidic ribosomal protein family 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre02.g143050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_2900V3.1 No alias 60S acidic ribosomal protein family 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_7080V3.1 No alias 60S acidic ribosomal protein family 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_27060V3.1 No alias 60S acidic ribosomal protein family 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_15480V3.1 No alias 60S acidic ribosomal protein family 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_20310V3.1 No alias 60S acidic ribosomal protein family 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006414 translational elongation ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
BP GO:0006412 translation IEP HCCA
MF GO:0008519 ammonium transmembrane transporter activity IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009786 regulation of asymmetric cell division IEP HCCA
MF GO:0015398 high-affinity secondary active ammonium transmembrane transporter activity IEP HCCA
BP GO:0015695 organic cation transport IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0072488 ammonium transmembrane transport IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT5G40040