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  5. AT5G42140

AT5G42140


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_01_0000631 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000631_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42140
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
Mp1g24610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_4760V3.1 No alias Regulator of chromosome condensation (RCC1) family with... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0007165 signal transduction ISS Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
MF GO:0035091 phosphatidylinositol binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004930 G protein-coupled receptor activity IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006862 nucleotide transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007009 plasma membrane organization IEP HCCA
MF GO:0008020 G protein-coupled photoreceptor activity IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
MF GO:0009881 photoreceptor activity IEP HCCA
MF GO:0009883 red or far-red light photoreceptor activity IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010150 leaf senescence IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015802 basic amino acid transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0043090 amino acid import IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043269 regulation of ion transport IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052482 defense response by cell wall thickening IEP HCCA
BP GO:0052542 defense response by callose deposition IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0052544 defense response by callose deposition in cell wall IEP HCCA
BP GO:0052545 callose localization IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090693 plant organ senescence IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:1904062 regulation of cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 617 683
IPR013591 Brevis_radix_dom 998 1053
IPR000408 Reg_chr_condens 460 507
IPR000408 Reg_chr_condens 398 446
IPR000408 Reg_chr_condens 512 561
IPR000408 Reg_chr_condens 566 613
IPR000408 Reg_chr_condens 343 394
IPR000408 Reg_chr_condens 291 339
IPR001849 PH_domain 13 118
IPR027988 BRX_N 864 899
PLAZA 3.0 Dicots AT5G42140