AT5G42790

Description : proteasome alpha subunit F1

Gene families : OG_01_0004233 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004233_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G42790
Cluster	HCCA: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cre06.g304300	No alias	Protein degradation.26S proteasome.20S core...	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IDA	Interproscan
CC	GO:0000502	proteasome complex	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005839	proteasome core complex	TAS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006635	fatty acid beta-oxidation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009062	fatty acid catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019395	fatty acid oxidation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030163	protein catabolic process	ISS	Interproscan
BP	GO:0030258	lipid modification	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034440	lipid oxidation	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043248	proteasome assembly	RCA	Interproscan
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046685	response to arsenic-containing substance	IMP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
BP	GO:0080129	proteasome core complex assembly	RCA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905368	peptidase complex	None	Extended
CC	GO:1905369	endopeptidase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	IEP	HCCA
BP	GO:0000162	tryptophan biosynthetic process	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0000217	DNA secondary structure binding	IEP	HCCA
CC	GO:0000228	nuclear chromosome	IEP	HCCA
MF	GO:0000287	magnesium ion binding	IEP	HCCA
BP	GO:0000338	protein deneddylation	IEP	HCCA
MF	GO:0000400	four-way junction DNA binding	IEP	HCCA
BP	GO:0000710	meiotic mismatch repair	IEP	HCCA
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004067	asparaginase activity	IEP	HCCA
MF	GO:0004106	chorismate mutase activity	IEP	HCCA
MF	GO:0004129	cytochrome-c oxidase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005740	mitochondrial envelope	IEP	HCCA
CC	GO:0005769	early endosome	IEP	HCCA
CC	GO:0005851	eukaryotic translation initiation factor 2B complex	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006040	amino sugar metabolic process	IEP	HCCA
BP	GO:0006290	pyrimidine dimer repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006446	regulation of translational initiation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006516	glycoprotein catabolic process	IEP	HCCA
BP	GO:0006528	asparagine metabolic process	IEP	HCCA
BP	GO:0006530	asparagine catabolic process	IEP	HCCA
BP	GO:0006563	L-serine metabolic process	IEP	HCCA
BP	GO:0006564	L-serine biosynthetic process	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0007029	endoplasmic reticulum organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
CC	GO:0008180	COP9 signalosome	IEP	HCCA
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
MF	GO:0008780	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	IEP	HCCA
BP	GO:0009065	glutamine family amino acid catabolic process	IEP	HCCA
BP	GO:0009068	aspartate family amino acid catabolic process	IEP	HCCA
BP	GO:0009100	glycoprotein metabolic process	IEP	HCCA
CC	GO:0010008	endosome membrane	IEP	HCCA
CC	GO:0010009	cytoplasmic side of endosome membrane	IEP	HCCA
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	HCCA
CC	GO:0010168	ER body	IEP	HCCA
BP	GO:0010387	COP9 signalosome assembly	IEP	HCCA
BP	GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	IEP	HCCA
CC	GO:0012506	vesicle membrane	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
BP	GO:0016093	polyprenol metabolic process	IEP	HCCA
BP	GO:0016094	polyprenol biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0019348	dolichol metabolic process	IEP	HCCA
BP	GO:0019408	dolichol biosynthetic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0030581	symbiont intracellular protein transport in host	IEP	HCCA
CC	GO:0030659	cytoplasmic vesicle membrane	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
CC	GO:0031901	early endosome membrane	IEP	HCCA
MF	GO:0032135	DNA insertion or deletion binding	IEP	HCCA
MF	GO:0032137	guanine/thymine mispair binding	IEP	HCCA
MF	GO:0032138	single base insertion or deletion binding	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
CC	GO:0032300	mismatch repair complex	IEP	HCCA
CC	GO:0032301	MutSalpha complex	IEP	HCCA
BP	GO:0032456	endocytic recycling	IEP	HCCA
BP	GO:0032527	protein exit from endoplasmic reticulum	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0032588	trans-Golgi network membrane	IEP	HCCA
BP	GO:0033345	asparagine catabolic process via L-aspartate	IEP	HCCA
MF	GO:0033549	MAP kinase phosphatase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043405	regulation of MAP kinase activity	IEP	HCCA
BP	GO:0043407	negative regulation of MAP kinase activity	IEP	HCCA
BP	GO:0043408	regulation of MAPK cascade	IEP	HCCA
BP	GO:0043409	negative regulation of MAPK cascade	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0043570	maintenance of DNA repeat elements	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0045022	early endosome to late endosome transport	IEP	HCCA
BP	GO:0045787	positive regulation of cell cycle	IEP	HCCA
BP	GO:0045910	negative regulation of DNA recombination	IEP	HCCA
BP	GO:0045931	positive regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046219	indolalkylamine biosynthetic process	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051701	biological process involved in interaction with host	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
BP	GO:0080034	host response to induction by symbiont of tumor, nodule or growth in host	IEP	HCCA
BP	GO:0090068	positive regulation of cell cycle process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0098552	side of membrane	IEP	HCCA
CC	GO:0098562	cytoplasmic side of membrane	IEP	HCCA
BP	GO:0098876	vesicle-mediated transport to the plasma membrane	IEP	HCCA
BP	GO:0098927	vesicle-mediated transport between endosomal compartments	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
BP	GO:1900864	mitochondrial RNA modification	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901989	positive regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901992	positive regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902751	positive regulation of cell cycle G2/M phase transition	IEP	HCCA
CC	GO:1990391	DNA repair complex	IEP	HCCA
BP	GO:2001289	lipid X metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	29	213
IPR000426	Proteasome_asu_N	6	28

External Links

PLAZA 3.0 Dicots	AT5G42790

AT5G42790

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation