AT5G42890

Description : sterol carrier protein 2

Gene families : OG_01_0004666 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004666_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G42890
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cre14.g633550	No alias	No description available	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g16070.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005496	steroid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005777	peroxisome	IDA	Interproscan
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006635	fatty acid beta-oxidation	IEP	Interproscan
BP	GO:0006635	fatty acid beta-oxidation	RCA	Interproscan
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006869	lipid transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007031	peroxisome organization	RCA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009062	fatty acid catabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009685	gibberellin metabolic process	None	Extended
BP	GO:0009686	gibberellin biosynthetic process	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IDA	Interproscan
BP	GO:0009740	gibberellic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009845	seed germination	IMP	Interproscan
BP	GO:0009845	seed germination	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0016101	diterpenoid metabolic process	None	Extended
BP	GO:0016102	diterpenoid biosynthetic process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
BP	GO:0019395	fatty acid oxidation	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030258	lipid modification	None	Extended
BP	GO:0032365	intracellular lipid transport	TAS	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
MF	GO:0032934	sterol binding	ISS	Interproscan
BP	GO:0034440	lipid oxidation	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042579	microbody	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046487	glyoxylate metabolic process	IMP	Interproscan
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048608	reproductive structure development	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003994	aconitate hydratase activity	IEP	HCCA
MF	GO:0003997	acyl-CoA oxidase activity	IEP	HCCA
MF	GO:0004069	L-aspartate:2-oxoglutarate aminotransferase activity	IEP	HCCA
MF	GO:0004383	guanylate cyclase activity	IEP	HCCA
MF	GO:0004451	isocitrate lyase activity	IEP	HCCA
MF	GO:0004474	malate synthase activity	IEP	HCCA
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	HCCA
MF	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity	IEP	HCCA
MF	GO:0005274	allantoin:proton symporter activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006101	citrate metabolic process	IEP	HCCA
BP	GO:0006102	isocitrate metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009649	entrainment of circadian clock	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
MF	GO:0009975	cyclase activity	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010114	response to red light	IEP	HCCA
BP	GO:0010162	seed dormancy process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010189	vitamin E biosynthetic process	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
MF	GO:0015334	high-affinity oligopeptide transmembrane transporter activity	IEP	HCCA
BP	GO:0015720	allantoin transport	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016615	malate dehydrogenase activity	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016707	gibberellin 3-beta-dioxygenase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016833	oxo-acid-lyase activity	IEP	HCCA
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	HCCA
BP	GO:0019217	regulation of fatty acid metabolic process	IEP	HCCA
MF	GO:0019825	oxygen binding	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022611	dormancy process	IEP	HCCA
BP	GO:0031329	regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031998	regulation of fatty acid beta-oxidation	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0035673	oligopeptide transmembrane transporter activity	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042360	vitamin E metabolic process	IEP	HCCA
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0042753	positive regulation of circadian rhythm	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
MF	GO:0042887	amide transmembrane transporter activity	IEP	HCCA
MF	GO:0042937	tripeptide transmembrane transporter activity	IEP	HCCA
BP	GO:0042938	dipeptide transport	IEP	HCCA
BP	GO:0042939	tripeptide transport	IEP	HCCA
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	HCCA
BP	GO:0046320	regulation of fatty acid oxidation	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048446	petal morphogenesis	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048579	negative regulation of long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048586	regulation of long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
MF	GO:0050342	tocopherol O-methyltransferase activity	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0050994	regulation of lipid catabolic process	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051791	medium-chain fatty acid metabolic process	IEP	HCCA
MF	GO:0070026	nitric oxide binding	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0080093	regulation of photorespiration	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:0090332	stomatal closure	IEP	HCCA
BP	GO:1902652	secondary alcohol metabolic process	IEP	HCCA
MF	GO:1904680	peptide transmembrane transporter activity	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003033	SCP2_sterol-bd_dom	16	113

External Links

PLAZA 3.0 Dicots	AT5G42890

AT5G42890

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation