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  5. AT1G03330

AT1G03330


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG_01_0007287 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007287_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G03330
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Cre10.g441950 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g25280.1 No alias component LSm2 of U6-associated LSm accessory... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_19710V3.1 No alias Small nuclear ribonucleoprotein family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex ISS Interproscan
CC GO:0005829 cytosol IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000036 acyl carrier activity IEP HCCA
CC GO:0000418 RNA polymerase IV complex IEP HCCA
CC GO:0000419 RNA polymerase V complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000731 DNA synthesis involved in DNA repair IEP HCCA
CC GO:0000785 chromatin IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0005513 detection of calcium ion IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005753 mitochondrial proton-transporting ATP synthase complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006928 movement of cell or subcellular component IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009853 photorespiration IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
CC GO:0016469 proton-transporting two-sector ATPase complex IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0019985 translesion synthesis IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
MF GO:0030337 DNA polymerase processivity factor activity IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0035966 response to topologically incorrect protein IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0042276 error-prone translesion synthesis IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0043628 ncRNA 3'-end processing IEP HCCA
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP HCCA
CC GO:0045259 proton-transporting ATP synthase complex IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0051192 prosthetic group binding IEP HCCA
BP GO:0051592 response to calcium ion IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0051788 response to misfolded protein IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0080129 proteasome core complex assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
MF GO:0140414 phosphopantetheine-dependent carrier activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 7 71
PLAZA 3.0 Dicots AT1G03330