AT5G46860

Description : Syntaxin/t-SNARE family protein

Gene families : OG_01_0001237 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001237_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G46860
Cluster	HCCA: Cluster_224

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cre01.g010700	No alias	Vesicle trafficking.SNARE target membrane recognition...	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0000325	plant-type vacuole	IDA	Interproscan
BP	GO:0000902	cell morphogenesis	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005484	SNAP receptor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	None	Extended
CC	GO:0005770	late endosome	TAS	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	None	Extended
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005798	Golgi-associated vesicle	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	TAS	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	RCA	Interproscan
BP	GO:0007033	vacuole organization	IGI	Interproscan
BP	GO:0007033	vacuole organization	RCA	Interproscan
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009556	microsporogenesis	RCA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009660	amyloplast organization	IMP	Interproscan
CC	GO:0009705	plant-type vacuole membrane	IDA	Interproscan
BP	GO:0009959	negative gravitropism	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010118	stomatal movement	IMP	Interproscan
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	RCA	Interproscan
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
BP	GO:0016197	endosomal transport	RCA	Interproscan
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030133	transport vesicle	None	Extended
CC	GO:0030135	coated vesicle	None	Extended
CC	GO:0030136	clathrin-coated vesicle	None	Extended
CC	GO:0030140	trans-Golgi network transport vesicle	TAS	Interproscan
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033037	polysaccharide localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034293	sexual sporulation	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043934	sporulation	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0048236	plant-type sporogenesis	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051321	meiotic cell cycle	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0052386	cell wall thickening	None	Extended
BP	GO:0052543	callose deposition in cell wall	RCA	Interproscan
BP	GO:0052545	callose localization	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000303	response to superoxide	IEP	HCCA
BP	GO:0000305	response to oxygen radical	IEP	HCCA
BP	GO:0001932	regulation of protein phosphorylation	IEP	HCCA
BP	GO:0001933	negative regulation of protein phosphorylation	IEP	HCCA
MF	GO:0004105	choline-phosphate cytidylyltransferase activity	IEP	HCCA
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	HCCA
MF	GO:0004725	protein tyrosine phosphatase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005885	Arp2/3 protein complex	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006301	postreplication repair	IEP	HCCA
BP	GO:0006469	negative regulation of protein kinase activity	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006656	phosphatidylcholine biosynthetic process	IEP	HCCA
BP	GO:0006858	extracellular transport	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
CC	GO:0010008	endosome membrane	IEP	HCCA
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	HCCA
CC	GO:0012506	vesicle membrane	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
MF	GO:0019829	ATPase-coupled cation transmembrane transporter activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030659	cytoplasmic vesicle membrane	IEP	HCCA
CC	GO:0030904	retromer complex	IEP	HCCA
CC	GO:0031371	ubiquitin conjugating enzyme complex	IEP	HCCA
CC	GO:0031372	UBC13-MMS2 complex	IEP	HCCA
BP	GO:0031400	negative regulation of protein modification process	IEP	HCCA
CC	GO:0031902	late endosome membrane	IEP	HCCA
CC	GO:0032585	multivesicular body membrane	IEP	HCCA
MF	GO:0033549	MAP kinase phosphatase activity	IEP	HCCA
MF	GO:0033550	MAP kinase tyrosine phosphatase activity	IEP	HCCA
BP	GO:0033673	negative regulation of kinase activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0042325	regulation of phosphorylation	IEP	HCCA
BP	GO:0042326	negative regulation of phosphorylation	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043405	regulation of MAP kinase activity	IEP	HCCA
BP	GO:0043407	negative regulation of MAP kinase activity	IEP	HCCA
BP	GO:0043408	regulation of MAPK cascade	IEP	HCCA
BP	GO:0043409	negative regulation of MAPK cascade	IEP	HCCA
BP	GO:0043549	regulation of kinase activity	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0045324	late endosome to vacuole transport	IEP	HCCA
BP	GO:0045859	regulation of protein kinase activity	IEP	HCCA
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
BP	GO:0051338	regulation of transferase activity	IEP	HCCA
BP	GO:0051348	negative regulation of transferase activity	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0071901	negative regulation of protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0090351	seedling development	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006011	Syntaxin_N	29	128
IPR000727	T_SNARE_dom	212	263

External Links

PLAZA 3.0 Dicots	AT5G46860

AT5G46860

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation