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  5. AT5G49270

AT5G49270


Description : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family


Gene families : OG_01_0000551 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000551_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G49270
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AT3G20580 No alias COBRA-like protein 10 precursor 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G27110 No alias COBRA-like protein 11 precursor 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g17600.1 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g18890.1 No alias COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_25450V3.1 No alias COBRA-like protein-7 precursor 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_1920V3.1 No alias COBRA-like protein-7 precursor 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_18020V3.1 No alias COBRA-like protein-7 precursor 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0009932 cell tip growth IMP Interproscan
BP GO:0010053 root epidermal cell differentiation IMP Interproscan
BP GO:0010054 trichoblast differentiation RCA Interproscan
CC GO:0031225 anchored component of membrane TAS Interproscan
BP GO:0048527 lateral root development RCA Interproscan
BP GO:0048589 developmental growth RCA Interproscan
BP GO:0048765 root hair cell differentiation IMP Interproscan
BP GO:0048765 root hair cell differentiation RCA Interproscan
BP GO:0048767 root hair elongation RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0000217 DNA secondary structure binding IEP HCCA
MF GO:0003680 minor groove of adenine-thymine-rich DNA binding IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005342 organic acid transmembrane transporter activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
MF GO:0005385 zinc ion transmembrane transporter activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006811 ion transport IEP HCCA
BP GO:0006812 cation transport IEP HCCA
BP GO:0006820 anion transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0006829 zinc ion transport IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0008446 GDP-mannose 4,6-dehydratase activity IEP HCCA
BP GO:0009267 cellular response to starvation IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
CC GO:0009531 secondary cell wall IEP HCCA
BP GO:0009647 skotomorphogenesis IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP HCCA
MF GO:0009927 histidine phosphotransfer kinase activity IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
BP GO:0010106 cellular response to iron ion starvation IEP HCCA
BP GO:0010167 response to nitrate IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010411 xyloglucan metabolic process IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
MF GO:0015171 amino acid transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015706 nitrate transport IEP HCCA
BP GO:0016128 phytosteroid metabolic process IEP HCCA
BP GO:0016129 phytosteroid biosynthetic process IEP HCCA
BP GO:0016131 brassinosteroid metabolic process IEP HCCA
BP GO:0016132 brassinosteroid biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0030775 glucuronoxylan 4-O-methyltransferase activity IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
BP GO:0031668 cellular response to extracellular stimulus IEP HCCA
BP GO:0031669 cellular response to nutrient levels IEP HCCA
BP GO:0035864 response to potassium ion IEP HCCA
BP GO:0035865 cellular response to potassium ion IEP HCCA
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0042594 response to starvation IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP HCCA
BP GO:0048766 root hair initiation IEP HCCA
BP GO:0055062 phosphate ion homeostasis IEP HCCA
BP GO:0071365 cellular response to auxin stimulus IEP HCCA
BP GO:0071496 cellular response to external stimulus IEP HCCA
BP GO:0072506 trivalent inorganic anion homeostasis IEP HCCA
BP GO:0072732 cellular response to calcium ion starvation IEP HCCA
BP GO:0120178 steroid hormone biosynthetic process IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
InterPro domains Description Start Stop
IPR006918 COBRA_pln 232 411
PLAZA 3.0 Dicots AT5G49270