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  5. AT5G52890

AT5G52890


Description : AT hook motif-containing protein


Gene families : OG_01_0002466 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G52890
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT4G21895 No alias DNA binding 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009567 double fertilization forming a zygote and endosperm IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042330 taxis IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0048235 pollen sperm cell differentiation IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT5G52890