AT5G53130

Description : cyclic nucleotide gated channel 1

Gene families : OG_01_0016237 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G53130
Cluster	HCCA: Cluster_82

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
MF	GO:0005217	intracellular ligand-gated ion channel activity	None	Extended
MF	GO:0005221	intracellular cyclic nucleotide activated cation channel activity	IGI	Interproscan
MF	GO:0005242	inward rectifier potassium channel activity	IGI	Interproscan
MF	GO:0005244	voltage-gated ion channel activity	None	Extended
MF	GO:0005249	voltage-gated potassium channel activity	None	Extended
MF	GO:0005261	cation channel activity	ISS	Interproscan
MF	GO:0005267	potassium channel activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005516	calmodulin binding	IEP	Interproscan
MF	GO:0005516	calmodulin binding	ISS	Interproscan
MF	GO:0005516	calmodulin binding	TAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0006813	potassium ion transport	IGI	Interproscan
BP	GO:0006816	calcium ion transport	IGI	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	cation transmembrane transporter activity	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015079	potassium ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022832	voltage-gated channel activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022843	voltage-gated cation channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
MF	GO:0030551	cyclic nucleotide binding	ISS	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043855	cyclic nucleotide-gated ion channel activity	None	Extended
MF	GO:0046873	metal ion transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0099094	ligand-gated cation channel activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0004372	glycine hydroxymethyltransferase activity	IEP	HCCA
MF	GO:0004392	heme oxygenase (decyclizing) activity	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
MF	GO:0005223	intracellular cGMP-activated cation channel activity	IEP	HCCA
MF	GO:0005345	purine nucleobase transmembrane transporter activity	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
CC	GO:0005811	lipid droplet	IEP	HCCA
CC	GO:0005876	spindle microtubule	IEP	HCCA
CC	GO:0005938	cell cortex	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006301	postreplication repair	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006563	L-serine metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006638	neutral lipid metabolic process	IEP	HCCA
BP	GO:0006639	acylglycerol metabolic process	IEP	HCCA
BP	GO:0006641	triglyceride metabolic process	IEP	HCCA
BP	GO:0006788	heme oxidation	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006914	autophagy	IEP	HCCA
BP	GO:0007026	negative regulation of microtubule depolymerization	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
BP	GO:0007602	phototransduction	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009292	genetic transfer	IEP	HCCA
BP	GO:0009294	DNA mediated transformation	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009582	detection of abiotic stimulus	IEP	HCCA
BP	GO:0009583	detection of light stimulus	IEP	HCCA
BP	GO:0009585	red, far-red light phototransduction	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009820	alkaloid metabolic process	IEP	HCCA
BP	GO:0009821	alkaloid biosynthetic process	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0010019	chloroplast-nucleus signaling pathway	IEP	HCCA
BP	GO:0010024	phytochromobilin biosynthetic process	IEP	HCCA
BP	GO:0010200	response to chitin	IEP	HCCA
BP	GO:0010225	response to UV-C	IEP	HCCA
BP	GO:0010243	response to organonitrogen compound	IEP	HCCA
BP	GO:0010337	regulation of salicylic acid metabolic process	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
BP	GO:0018126	protein hydroxylation	IEP	HCCA
BP	GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	IEP	HCCA
BP	GO:0019433	triglyceride catabolic process	IEP	HCCA
BP	GO:0019511	peptidyl-proline hydroxylation	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0019788	NEDD8 transferase activity	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
BP	GO:0030258	lipid modification	IEP	HCCA
BP	GO:0030865	cortical cytoskeleton organization	IEP	HCCA
BP	GO:0031110	regulation of microtubule polymerization or depolymerization	IEP	HCCA
BP	GO:0031111	negative regulation of microtubule polymerization or depolymerization	IEP	HCCA
BP	GO:0031114	regulation of microtubule depolymerization	IEP	HCCA
BP	GO:0031122	cytoplasmic microtubule organization	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
CC	GO:0031371	ubiquitin conjugating enzyme complex	IEP	HCCA
CC	GO:0031372	UBC13-MMS2 complex	IEP	HCCA
BP	GO:0031647	regulation of protein stability	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0032886	regulation of microtubule-based process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033037	polysaccharide localization	IEP	HCCA
BP	GO:0034613	cellular protein localization	IEP	HCCA
BP	GO:0034644	cellular response to UV	IEP	HCCA
BP	GO:0035335	peptidyl-tyrosine dephosphorylation	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0042126	nitrate metabolic process	IEP	HCCA
BP	GO:0042128	nitrate assimilation	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043405	regulation of MAP kinase activity	IEP	HCCA
BP	GO:0043407	negative regulation of MAP kinase activity	IEP	HCCA
BP	GO:0043408	regulation of MAPK cascade	IEP	HCCA
BP	GO:0043409	negative regulation of MAPK cascade	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
BP	GO:0043622	cortical microtubule organization	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044764	multi-organism cellular process	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046461	neutral lipid catabolic process	IEP	HCCA
BP	GO:0046464	acylglycerol catabolic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046503	glycerolipid catabolic process	IEP	HCCA
BP	GO:0046839	phospholipid dephosphorylation	IEP	HCCA
BP	GO:0046856	phosphatidylinositol dephosphorylation	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048585	negative regulation of response to stimulus	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050821	protein stabilization	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
MF	GO:0051010	microtubule plus-end binding	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0051202	phytochromobilin metabolic process	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0052542	defense response by callose deposition	IEP	HCCA
BP	GO:0052545	callose localization	IEP	HCCA
MF	GO:0052866	phosphatidylinositol phosphate phosphatase activity	IEP	HCCA
BP	GO:0061919	process utilizing autophagic mechanism	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0070300	phosphatidic acid binding	IEP	HCCA
BP	GO:0070507	regulation of microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071494	cellular response to UV-C	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071941	nitrogen cycle metabolic process	IEP	HCCA
CC	GO:0071944	cell periphery	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1901879	regulation of protein depolymerization	IEP	HCCA
BP	GO:1901880	negative regulation of protein depolymerization	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	HCCA
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	HCCA
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000595	cNMP-bd_dom	507	597
IPR005821	Ion_trans_dom	94	413

External Links

PLAZA 3.0 Dicots	AT5G53130

AT5G53130

Expression Profile

Co-expression Networks

Functional Annotation