AT5G53840

Description : F-box/RNI-like/FBD-like domains-containing protein

Gene families : OG_01_0000057 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G53840
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AT1G13780	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G16940	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G32020	No alias	F-box family protein	0.12	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G60400	No alias	F-box/RNI-like superfamily protein	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G66290	No alias	F-box/RNI-like superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G66640	No alias	RNI-like superfamily protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G78750	No alias	F-box/RNI-like superfamily protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G78760	No alias	F-box/RNI-like superfamily protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G27505	No alias	FBD-like domain family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G23955	No alias	F-box family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G18770	No alias	F-box/FBD-like domains containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22590	No alias	Leucine Rich Repeat protein family	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22600	No alias	FBD / Leucine Rich Repeat domains containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22670	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22680	No alias	FUNCTIONS IN: molecular_function unknown; INVOLVED IN:...	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22720	No alias	F-box/RNI-like superfamily protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22730	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G25850	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G27750	No alias	F-box/FBD-like domains containing protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44940	No alias	F-box/RNI-like superfamily protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44950	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44970	No alias	Protein with RNI-like/FBD-like domains	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G44980	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G53635	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
CC	GO:0000311	plastid large ribosomal subunit	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0010315	auxin efflux	IEP	HCCA
BP	GO:0010541	acropetal auxin transport	IEP	HCCA
MF	GO:0045309	protein phosphorylated amino acid binding	IEP	HCCA
MF	GO:0051219	phosphoprotein binding	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013101	Leu-rich_rpt_2	163	188
IPR006566	FBD	364	406
IPR001810	F-box_dom	20	55

External Links

PLAZA 3.0 Dicots	AT5G53840

AT5G53840

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation