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AT5G54890


Description : RNA-binding CRS1 / YhbY (CRM) domain-containing protein


Gene families : OG_01_0001349 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001349_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G54890
Cluster HCCA: Cluster_179


Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005771 multivesicular body IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005819 spindle IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007041 lysosomal transport IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0008154 actin polymerization or depolymerization IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
BP GO:0008333 endosome to lysosome transport IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010101 post-embryonic root morphogenesis IEP HCCA
BP GO:0010102 lateral root morphogenesis IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
MF GO:0010427 abscisic acid binding IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 posttranscriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016441 posttranscriptional gene silencing IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0019840 isoprenoid binding IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
BP GO:0030041 actin filament polymerization IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0030904 retromer complex IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
MF GO:0033293 monocarboxylic acid binding IEP HCCA
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0042562 hormone binding IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
MF GO:0043178 alcohol binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
BP GO:0140458 pre-transcriptional gene silencing by RNA IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 143 228
IPR001890 RNA-binding_CRM 265 346
PLAZA 3.0 Dicots AT5G54890