AT5G58240

Description : FRAGILE HISTIDINE TRIAD

Gene families : OG_01_0005117 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005117_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G58240
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pp3c4_3210V3.1	No alias	FRAGILE HISTIDINE TRIAD	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004551	nucleotide diphosphatase activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	None	Extended
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016819	hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043530	adenosine 5'-monophosphoramidase activity	IDA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0047627	adenylylsulfatase activity	IDA	Interproscan
MF	GO:0047710	bis(5'-adenosyl)-triphosphatase activity	ISS	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
CC	GO:0000418	RNA polymerase IV complex	IEP	HCCA
CC	GO:0000419	RNA polymerase V complex	IEP	HCCA
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	HCCA
BP	GO:0000731	DNA synthesis involved in DNA repair	IEP	HCCA
MF	GO:0000773	phosphatidyl-N-methylethanolamine N-methyltransferase activity	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005539	glycosaminoglycan binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005665	RNA polymerase II, core complex	IEP	HCCA
CC	GO:0005885	Arp2/3 protein complex	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
MF	GO:0008327	methyl-CpG binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
CC	GO:0010369	chromocenter	IEP	HCCA
CC	GO:0016272	prefoldin complex	IEP	HCCA
CC	GO:0016591	RNA polymerase II, holoenzyme	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
BP	GO:0019985	translesion synthesis	IEP	HCCA
MF	GO:0030337	DNA polymerase processivity factor activity	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0035064	methylated histone binding	IEP	HCCA
BP	GO:0042276	error-prone translesion synthesis	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0042834	peptidoglycan binding	IEP	HCCA
CC	GO:0043076	megasporocyte nucleus	IEP	HCCA
CC	GO:0043078	polar nucleus	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA
MF	GO:0070628	proteasome binding	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
MF	GO:0080101	phosphatidyl-N-dimethylethanolamine N-methyltransferase activity	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140030	modification-dependent protein binding	IEP	HCCA
MF	GO:0140034	methylation-dependent protein binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001310	Histidine_triad_HIT	37	128

External Links

PLAZA 3.0 Dicots	AT5G58240

AT5G58240

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation