AT5G60100

Description : pseudo-response regulator 3

Gene families : OG_01_0000933 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000933_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G60100
Cluster	HCCA: Cluster_219

Target	Alias	Description	ECC score	Gene Family Method
Pp3c16_18460V3.1	No alias	pseudo-response regulator 7	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_18610V3.1	No alias	pseudo-response regulator 7	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_4920V3.1	No alias	pseudo-response regulator 7	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_5040V3.1	No alias	pseudo-response regulator 7	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006333	chromatin assembly or disassembly	RCA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0007623	circadian rhythm	RCA	Interproscan
BP	GO:0007623	circadian rhythm	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016310	phosphorylation	IDA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032091	negative regulation of protein binding	IDA	Interproscan
BP	GO:0042752	regulation of circadian rhythm	IEP	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043393	regulation of protein binding	None	Extended
BP	GO:0044092	negative regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051098	regulation of binding	None	Extended
BP	GO:0051100	negative regulation of binding	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000025	maltose catabolic process	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0000272	polysaccharide catabolic process	IEP	HCCA
CC	GO:0000785	chromatin	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003844	1,4-alpha-glucan branching enzyme activity	IEP	HCCA
MF	GO:0003933	GTP cyclohydrolase activity	IEP	HCCA
MF	GO:0003935	GTP cyclohydrolase II activity	IEP	HCCA
MF	GO:0004028	3-chloroallyl aldehyde dehydrogenase activity	IEP	HCCA
MF	GO:0004133	glycogen debranching enzyme activity	IEP	HCCA
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	HCCA
MF	GO:0004556	alpha-amylase activity	IEP	HCCA
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	HCCA
MF	GO:0004693	cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004777	succinate-semialdehyde dehydrogenase (NAD+) activity	IEP	HCCA
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0005982	starch metabolic process	IEP	HCCA
BP	GO:0005983	starch catabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006351	transcription, DNA-templated	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006536	glutamate metabolic process	IEP	HCCA
BP	GO:0006538	glutamate catabolic process	IEP	HCCA
BP	GO:0006540	glutamate decarboxylation to succinate	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
BP	GO:0006848	pyruvate transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
MF	GO:0008028	monocarboxylic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0008324	cation transmembrane transporter activity	IEP	HCCA
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	HCCA
MF	GO:0009013	succinate-semialdehyde dehydrogenase [NAD(P)+] activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009065	glutamine family amino acid catabolic process	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0009251	glucan catabolic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009313	oligosaccharide catabolic process	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009448	gamma-aminobutyric acid metabolic process	IEP	HCCA
BP	GO:0009450	gamma-aminobutyric acid catabolic process	IEP	HCCA
CC	GO:0009504	cell plate	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0009569	chloroplast starch grain	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
BP	GO:0010021	amylopectin biosynthetic process	IEP	HCCA
BP	GO:0010031	circumnutation	IEP	HCCA
BP	GO:0010353	response to trehalose	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015386	potassium:proton antiporter activity	IEP	HCCA
MF	GO:0015562	efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0015718	monocarboxylic acid transport	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016160	amylase activity	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0016695	oxidoreductase activity, acting on hydrogen as donor	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016781	phosphotransferase activity, paired acceptors	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
MF	GO:0019156	isoamylase activity	IEP	HCCA
MF	GO:0019200	carbohydrate kinase activity	IEP	HCCA
MF	GO:0019238	cyclohydrolase activity	IEP	HCCA
BP	GO:0019252	starch biosynthetic process	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022821	potassium ion antiporter activity	IEP	HCCA
MF	GO:0030527	structural constituent of chromatin	IEP	HCCA
BP	GO:0033354	chlorophyll cycle	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
CC	GO:0043036	starch grain	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043649	dicarboxylic acid catabolic process	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044247	cellular polysaccharide catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	HCCA
BP	GO:0045037	protein import into chloroplast stroma	IEP	HCCA
BP	GO:0046352	disaccharide catabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0046995	oxidoreductase activity, acting on hydrogen as donor, with other known acceptors	IEP	HCCA
BP	GO:0048571	long-day photoperiodism	IEP	HCCA
BP	GO:0048574	long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048579	negative regulation of long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048586	regulation of long-day photoperiodism, flowering	IEP	HCCA
MF	GO:0050454	coenzyme F420 hydrogenase activity	IEP	HCCA
MF	GO:0050521	alpha-glucan, water dikinase activity	IEP	HCCA
MF	GO:0050833	pyruvate transmembrane transporter activity	IEP	HCCA
BP	GO:0050879	multicellular organismal movement	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
MF	GO:0051752	phosphoglucan, water dikinase activity	IEP	HCCA
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0090415	7-hydroxymethyl chlorophyll a reductase activity	IEP	HCCA
MF	GO:0097472	cyclin-dependent protein kinase activity	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	HCCA
BP	GO:2000896	amylopectin metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010402	CCT_domain	442	484
IPR001789	Sig_transdc_resp-reg_receiver	66	177

External Links

PLAZA 3.0 Dicots	AT5G60100

AT5G60100

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation