Coexpression cluster: Cluster_219 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000272 polysaccharide catabolic process 14.81% (8/54) 6.39 0.0 0.0
GO:0005982 starch metabolic process 20.37% (11/54) 4.64 0.0 0.0
GO:0009251 glucan catabolic process 11.11% (6/54) 7.5 0.0 0.0
GO:0044247 cellular polysaccharide catabolic process 11.11% (6/54) 7.5 0.0 0.0
GO:0005983 starch catabolic process 11.11% (6/54) 7.5 0.0 0.0
GO:0019252 starch biosynthetic process 18.52% (10/54) 4.78 0.0 0.0
GO:0044275 cellular carbohydrate catabolic process 11.11% (6/54) 6.88 0.0 0.0
GO:0044042 glucan metabolic process 20.37% (11/54) 3.92 0.0 0.0
GO:0006073 cellular glucan metabolic process 20.37% (11/54) 3.92 0.0 0.0
GO:0009250 glucan biosynthetic process 18.52% (10/54) 4.18 0.0 0.0
GO:0044264 cellular polysaccharide metabolic process 20.37% (11/54) 3.32 0.0 1e-06
GO:0048511 rhythmic process 12.96% (7/54) 4.65 0.0 1e-06
GO:0007623 circadian rhythm 12.96% (7/54) 4.65 0.0 1e-06
GO:0009570 chloroplast stroma 20.37% (11/54) 3.26 0.0 1e-06
GO:0009532 plastid stroma 20.37% (11/54) 3.26 0.0 1e-06
GO:0000023 maltose metabolic process 12.96% (7/54) 4.56 0.0 1e-06
GO:0033692 cellular polysaccharide biosynthetic process 18.52% (10/54) 3.43 0.0 1e-06
GO:0044262 cellular carbohydrate metabolic process 20.37% (11/54) 3.13 0.0 1e-06
GO:0034637 cellular carbohydrate biosynthetic process 18.52% (10/54) 3.33 0.0 1e-06
GO:0005976 polysaccharide metabolic process 20.37% (11/54) 3.1 0.0 2e-06
GO:0005984 disaccharide metabolic process 12.96% (7/54) 4.22 0.0 3e-06
GO:0000271 polysaccharide biosynthetic process 18.52% (10/54) 3.19 0.0 3e-06
GO:0009507 chloroplast 42.59% (23/54) 1.65 0.0 4e-06
GO:0009311 oligosaccharide metabolic process 12.96% (7/54) 4.09 0.0 4e-06
GO:0009536 plastid 42.59% (23/54) 1.63 0.0 5e-06
GO:0016052 carbohydrate catabolic process 14.81% (8/54) 3.61 0.0 7e-06
GO:0016051 carbohydrate biosynthetic process 20.37% (11/54) 2.76 0.0 1.1e-05
GO:0005975 carbohydrate metabolic process 24.07% (13/54) 2.39 1e-06 1.6e-05
GO:0003824 catalytic activity 53.7% (29/54) 1.19 2e-06 3.2e-05
GO:0003844 1,4-alpha-glucan branching enzyme activity 3.7% (2/54) 9.0 4e-06 7.6e-05
GO:0009057 macromolecule catabolic process 16.67% (9/54) 2.83 4e-06 8.4e-05
GO:0080041 ADP-ribose pyrophosphohydrolase activity 3.7% (2/54) 8.42 1.1e-05 0.000208
GO:0019144 ADP-sugar diphosphatase activity 3.7% (2/54) 8.42 1.1e-05 0.000208
GO:0034645 cellular macromolecule biosynthetic process 20.37% (11/54) 2.14 3.1e-05 0.000551
GO:0004133 glycogen debranching enzyme activity 3.7% (2/54) 7.68 3.7e-05 0.000635
GO:0003883 CTP synthase activity 3.7% (2/54) 7.68 3.7e-05 0.000635
GO:0016143 S-glycoside metabolic process 9.26% (5/54) 3.66 4.7e-05 0.000735
GO:0019757 glycosinolate metabolic process 9.26% (5/54) 3.66 4.7e-05 0.000735
GO:0019760 glucosinolate metabolic process 9.26% (5/54) 3.66 4.7e-05 0.000735
GO:0010021 amylopectin biosynthetic process 3.7% (2/54) 7.42 5.6e-05 0.000835
GO:2000896 amylopectin metabolic process 3.7% (2/54) 7.42 5.6e-05 0.000835
GO:0043085 positive regulation of catalytic activity 7.41% (4/54) 4.15 7.6e-05 0.001116
GO:0044093 positive regulation of molecular function 7.41% (4/54) 4.13 8.2e-05 0.001165
GO:1901657 glycosyl compound metabolic process 9.26% (5/54) 3.45 9.4e-05 0.001306
GO:0009059 macromolecule biosynthetic process 20.37% (11/54) 1.95 9.8e-05 0.001333
GO:0004556 alpha-amylase activity 3.7% (2/54) 7.0 0.000104 0.001386
GO:0065009 regulation of molecular function 9.26% (5/54) 3.38 0.000119 0.001546
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 3.7% (2/54) 6.54 0.000204 0.002599
GO:0030247 polysaccharide binding 3.7% (2/54) 6.42 0.000244 0.00299
GO:0044249 cellular biosynthetic process 31.48% (17/54) 1.31 0.000243 0.003038
GO:1901576 organic substance biosynthetic process 33.33% (18/54) 1.24 0.00028 0.003369
GO:1901137 carbohydrate derivative biosynthetic process 11.11% (6/54) 2.66 0.000365 0.004304
GO:0009664 plant-type cell wall organization 9.26% (5/54) 3.0 0.000394 0.004472
GO:1901575 organic substance catabolic process 18.52% (10/54) 1.84 0.000392 0.004539
GO:0009058 biosynthetic process 33.33% (18/54) 1.2 0.000411 0.004578
GO:0008173 RNA methyltransferase activity 3.7% (2/54) 6.0 0.000441 0.00483
GO:0016160 amylase activity 3.7% (2/54) 5.91 0.000499 0.005372
GO:0016757 glycosyltransferase activity 11.11% (6/54) 2.51 0.000623 0.006473
GO:0050790 regulation of catalytic activity 7.41% (4/54) 3.36 0.000621 0.006563
GO:0016787 hydrolase activity 20.37% (11/54) 1.58 0.000874 0.008927
GO:0019203 carbohydrate phosphatase activity 3.7% (2/54) 5.3 0.00118 0.01186
GO:0071669 plant-type cell wall organization or biogenesis 9.26% (5/54) 2.61 0.00134 0.013246
GO:0009707 chloroplast outer membrane 3.7% (2/54) 5.19 0.001369 0.013323
GO:0009056 catabolic process 18.52% (10/54) 1.6 0.001457 0.013951
GO:0050619 phytochromobilin:ferredoxin oxidoreductase activity 1.85% (1/54) 9.0 0.001953 0.015749
GO:2001070 starch binding 1.85% (1/54) 9.0 0.001953 0.015749
GO:0051752 phosphoglucan, water dikinase activity 1.85% (1/54) 9.0 0.001953 0.015749
GO:0009569 chloroplast starch grain 1.85% (1/54) 9.0 0.001953 0.015749
GO:0016422 mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity 1.85% (1/54) 9.0 0.001953 0.015749
GO:0032091 negative regulation of protein binding 1.85% (1/54) 9.0 0.001953 0.015749
GO:0008174 mRNA methyltransferase activity 1.85% (1/54) 9.0 0.001953 0.015749
GO:0010303 limit dextrinase activity 1.85% (1/54) 9.0 0.001953 0.015749
GO:0009013 succinate-semialdehyde dehydrogenase [NAD(P)+] activity 1.85% (1/54) 9.0 0.001953 0.015749
GO:0051060 pullulanase activity 1.85% (1/54) 9.0 0.001953 0.015749
GO:0004777 succinate-semialdehyde dehydrogenase (NAD+) activity 1.85% (1/54) 9.0 0.001953 0.015749
GO:0009527 plastid outer membrane 3.7% (2/54) 4.96 0.001901 0.017925
GO:0044272 sulfur compound biosynthetic process 9.26% (5/54) 2.43 0.002338 0.018615
GO:0006790 sulfur compound metabolic process 11.11% (6/54) 2.12 0.002454 0.019285
GO:0006470 protein dephosphorylation 3.7% (2/54) 4.64 0.002923 0.022117
GO:0042364 water-soluble vitamin biosynthetic process 3.7% (2/54) 4.64 0.002923 0.022117
GO:0071555 cell wall organization 9.26% (5/54) 2.36 0.002865 0.022232
GO:0071704 organic substance metabolic process 44.44% (24/54) 0.75 0.003095 0.023136
GO:0006767 water-soluble vitamin metabolic process 3.7% (2/54) 4.57 0.00321 0.023428
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 3.7% (2/54) 4.57 0.00321 0.023428
GO:0009448 gamma-aminobutyric acid metabolic process 1.85% (1/54) 8.0 0.003902 0.024656
GO:0006538 glutamate catabolic process 1.85% (1/54) 8.0 0.003902 0.024656
GO:0006540 glutamate decarboxylation to succinate 1.85% (1/54) 8.0 0.003902 0.024656
GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor 1.85% (1/54) 8.0 0.003902 0.024656
GO:0043036 starch grain 1.85% (1/54) 8.0 0.003902 0.024656
GO:0009450 gamma-aminobutyric acid catabolic process 1.85% (1/54) 8.0 0.003902 0.024656
GO:0004134 4-alpha-glucanotransferase activity 1.85% (1/54) 8.0 0.003902 0.024656
GO:0000025 maltose catabolic process 1.85% (1/54) 8.0 0.003902 0.024656
GO:0051100 negative regulation of binding 1.85% (1/54) 8.0 0.003902 0.024656
GO:0080042 ADP-glucose pyrophosphohydrolase activity 1.85% (1/54) 8.0 0.003902 0.024656
GO:0010266 response to vitamin B1 1.85% (1/54) 8.0 0.003902 0.024656
GO:0008152 metabolic process 46.3% (25/54) 0.7 0.004195 0.02624
GO:0045229 external encapsulating structure organization 9.26% (5/54) 2.21 0.004467 0.026332
GO:0019758 glycosinolate biosynthetic process 5.56% (3/54) 3.18 0.004425 0.026335
GO:0016144 S-glycoside biosynthetic process 5.56% (3/54) 3.18 0.004425 0.026335
GO:0019761 glucosinolate biosynthetic process 5.56% (3/54) 3.18 0.004425 0.026335
GO:0042752 regulation of circadian rhythm 3.7% (2/54) 4.48 0.003666 0.026437
GO:0031968 organelle outer membrane 3.7% (2/54) 4.36 0.004317 0.026465
GO:0019867 outer membrane 3.7% (2/54) 4.36 0.004317 0.026465
GO:0016879 ligase activity, forming carbon-nitrogen bonds 3.7% (2/54) 4.3 0.004662 0.027214
GO:0006333 chromatin assembly or disassembly 3.7% (2/54) 4.45 0.003824 0.027257
GO:1901659 glycosyl compound biosynthetic process 5.56% (3/54) 3.14 0.004799 0.027752
GO:0006098 pentose-phosphate shunt 5.56% (3/54) 3.13 0.004954 0.02838
GO:0016781 phosphotransferase activity, paired acceptors 1.85% (1/54) 7.42 0.005847 0.029377
GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity 1.85% (1/54) 7.42 0.005847 0.029377
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.85% (1/54) 7.42 0.005847 0.029377
GO:0003935 GTP cyclohydrolase II activity 1.85% (1/54) 7.42 0.005847 0.029377
GO:0019156 isoamylase activity 1.85% (1/54) 7.42 0.005847 0.029377
GO:0016423 tRNA (guanine) methyltransferase activity 1.85% (1/54) 7.42 0.005847 0.029377
GO:0010018 far-red light signaling pathway 1.85% (1/54) 7.42 0.005847 0.029377
GO:0031314 extrinsic component of mitochondrial inner membrane 1.85% (1/54) 7.42 0.005847 0.029377
GO:0010024 phytochromobilin biosynthetic process 1.85% (1/54) 7.42 0.005847 0.029377
GO:0051202 phytochromobilin metabolic process 1.85% (1/54) 7.42 0.005847 0.029377
GO:1901135 carbohydrate derivative metabolic process 12.96% (7/54) 1.7 0.005358 0.030411
GO:0051156 glucose 6-phosphate metabolic process 5.56% (3/54) 3.08 0.005436 0.030572
GO:0044238 primary metabolic process 38.89% (21/54) 0.76 0.006162 0.03071
GO:0006740 NADPH regeneration 5.56% (3/54) 3.07 0.005519 0.030757
GO:0009110 vitamin biosynthetic process 3.7% (2/54) 4.17 0.005576 0.030793
GO:0006739 NADP metabolic process 5.56% (3/54) 3.05 0.005773 0.031597
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 3.7% (2/54) 4.02 0.006772 0.033479
GO:0008654 phospholipid biosynthetic process 7.41% (4/54) 2.4 0.006885 0.033762
GO:0019748 secondary metabolic process 9.26% (5/54) 2.06 0.006947 0.033798
GO:0042724 thiamine-containing compound biosynthetic process 1.85% (1/54) 7.0 0.007788 0.035104
GO:0006651 diacylglycerol biosynthetic process 1.85% (1/54) 7.0 0.007788 0.035104
GO:0080186 developmental vegetative growth 1.85% (1/54) 7.0 0.007788 0.035104
GO:0034309 primary alcohol biosynthetic process 1.85% (1/54) 7.0 0.007788 0.035104
GO:0003933 GTP cyclohydrolase activity 1.85% (1/54) 7.0 0.007788 0.035104
GO:0043393 regulation of protein binding 1.85% (1/54) 7.0 0.007788 0.035104
GO:0043649 dicarboxylic acid catabolic process 1.85% (1/54) 7.0 0.007788 0.035104
GO:0009228 thiamine biosynthetic process 1.85% (1/54) 7.0 0.007788 0.035104
GO:0016311 dephosphorylation 3.7% (2/54) 3.96 0.00741 0.035768
GO:0006644 phospholipid metabolic process 7.41% (4/54) 2.33 0.00826 0.036961
GO:0071554 cell wall organization or biogenesis 9.26% (5/54) 2.02 0.007718 0.036961
GO:0044237 cellular metabolic process 40.74% (22/54) 0.69 0.009196 0.040849
GO:0071490 cellular response to far red light 1.85% (1/54) 6.68 0.009726 0.042283
GO:0046339 diacylglycerol metabolic process 1.85% (1/54) 6.68 0.009726 0.042283
GO:0008175 tRNA methyltransferase activity 1.85% (1/54) 6.68 0.009726 0.042283
GO:0019682 glyceraldehyde-3-phosphate metabolic process 5.56% (3/54) 2.75 0.010071 0.042871
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 5.56% (3/54) 2.75 0.010071 0.042871
GO:0031969 chloroplast membrane 3.7% (2/54) 3.73 0.009971 0.043045
GO:0046490 isopentenyl diphosphate metabolic process 5.56% (3/54) 2.73 0.010555 0.044316
GO:0009240 isopentenyl diphosphate biosynthetic process 5.56% (3/54) 2.73 0.010555 0.044316
GO:0043170 macromolecule metabolic process 29.63% (16/54) 0.85 0.011028 0.045988
GO:0033273 response to vitamin 1.85% (1/54) 6.42 0.01166 0.046113
GO:0051098 regulation of binding 1.85% (1/54) 6.42 0.01166 0.046113
GO:0042723 thiamine-containing compound metabolic process 1.85% (1/54) 6.42 0.01166 0.046113
GO:0051536 iron-sulfur cluster binding 1.85% (1/54) 6.42 0.01166 0.046113
GO:0019238 cyclohydrolase activity 1.85% (1/54) 6.42 0.01166 0.046113
GO:0051540 metal cluster binding 1.85% (1/54) 6.42 0.01166 0.046113
GO:0004845 uracil phosphoribosyltransferase activity 1.85% (1/54) 6.42 0.01166 0.046113
GO:0006772 thiamine metabolic process 1.85% (1/54) 6.42 0.01166 0.046113
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 3.7% (2/54) 3.56 0.012591 0.049478
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_41 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_85 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_87 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_112 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_130 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_146 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_148 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_173 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_180 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_191 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_249 0.029 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Arabidopsis thaliana HCCA Cluster_259 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_55 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_82 0.032 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_98 0.014 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_119 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Chlamydomonas reinhardtii HCCA Cluster_157 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_21 0.027 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_66 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_100 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_136 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_144 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_145 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_147 0.026 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Marchantia polymorpha HCCA Cluster_234 0.036 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_8 0.024 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_26 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_94 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_105 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_120 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_133 0.025 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_140 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_144 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_194 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_206 0.017 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_220 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_223 0.019 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_229 0.013 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_252 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Physcomitrella patens HCCA Cluster_304 0.018 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_61 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_90 0.016 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_122 0.012 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_123 0.015 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Zygnema circumcarinatum HCCA Cluster_162 0.021 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci Compare
Sequences (54) (download table)

InterPro Domains

GO Terms

Family Terms