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  5. AT5G61330

AT5G61330


Description : rRNA processing protein-related


Gene families : OG_01_0005971 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G61330
Cluster HCCA: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
Pp3c5_7370V3.1 No alias rRNA processing protein-related 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004806 triglyceride lipase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005874 microtubule IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007006 mitochondrial membrane organization IEP HCCA
BP GO:0007007 inner mitochondrial membrane organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
MF GO:0010349 L-galactose dehydrogenase activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0019852 L-ascorbic acid metabolic process IEP HCCA
BP GO:0019853 L-ascorbic acid biosynthetic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045039 protein insertion into mitochondrial inner membrane IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0051204 protein insertion into mitochondrial membrane IEP HCCA
BP GO:0051205 protein insertion into membrane IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:1901334 lactone metabolic process IEP HCCA
BP GO:1901336 lactone biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025160 AATF 142 271
IPR012617 AATF_C 350 425
PLAZA 3.0 Dicots AT5G61330