AT5G61500

Description : autophagy 3 (APG3)

Gene families : OG_01_0006721 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006721_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G61500
Cluster	HCCA: Cluster_76

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006914	autophagy	ISS	Interproscan
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016049	cell growth	RCA	Interproscan
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0061919	process utilizing autophagic mechanism	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000098	sulfur amino acid catabolic process	IEP	HCCA
CC	GO:0000813	ESCRT I complex	IEP	HCCA
BP	GO:0001709	cell fate determination	IEP	HCCA
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	HCCA
BP	GO:0002218	activation of innate immune response	IEP	HCCA
BP	GO:0002253	activation of immune response	IEP	HCCA
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002684	positive regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
BP	GO:0002833	positive regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003923	GPI-anchor transamidase activity	IEP	HCCA
MF	GO:0004143	diacylglycerol kinase activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004520	endodeoxyribonuclease activity	IEP	HCCA
MF	GO:0004536	deoxyribonuclease activity	IEP	HCCA
MF	GO:0004664	prephenate dehydratase activity	IEP	HCCA
MF	GO:0004708	MAP kinase kinase activity	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005769	early endosome	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
CC	GO:0005771	multivesicular body	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006294	nucleotide-excision repair, preincision complex assembly	IEP	HCCA
BP	GO:0006308	DNA catabolic process	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006513	protein monoubiquitination	IEP	HCCA
BP	GO:0006558	L-phenylalanine metabolic process	IEP	HCCA
BP	GO:0006625	protein targeting to peroxisome	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	HCCA
BP	GO:0006829	zinc ion transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0007006	mitochondrial membrane organization	IEP	HCCA
BP	GO:0007007	inner mitochondrial membrane organization	IEP	HCCA
BP	GO:0007041	lysosomal transport	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0007205	protein kinase C-activating G protein-coupled receptor signaling pathway	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0008333	endosome to lysosome transport	IEP	HCCA
MF	GO:0008660	1-aminocyclopropane-1-carboxylate deaminase activity	IEP	HCCA
BP	GO:0009062	fatty acid catabolic process	IEP	HCCA
BP	GO:0009093	cysteine catabolic process	IEP	HCCA
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	HCCA
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	HCCA
BP	GO:0009636	response to toxic substance	IEP	HCCA
BP	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009866	induced systemic resistance, ethylene mediated signaling pathway	IEP	HCCA
BP	GO:0009957	epidermal cell fate specification	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010213	non-photoreactive DNA repair	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
MF	GO:0015386	potassium:proton antiporter activity	IEP	HCCA
BP	GO:0015919	peroxisomal membrane transport	IEP	HCCA
BP	GO:0016042	lipid catabolic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
BP	GO:0016558	protein import into peroxisome matrix	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016615	malate dehydrogenase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA
MF	GO:0016847	1-aminocyclopropane-1-carboxylate synthase activity	IEP	HCCA
MF	GO:0016888	endodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0017108	5'-flap endonuclease activity	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
MF	GO:0019148	D-cysteine desulfhydrase activity	IEP	HCCA
MF	GO:0019239	deaminase activity	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0019447	D-cysteine catabolic process	IEP	HCCA
BP	GO:0019478	D-amino acid catabolic process	IEP	HCCA
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	HCCA
MF	GO:0022821	potassium ion antiporter activity	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
MF	GO:0030151	molybdenum ion binding	IEP	HCCA
CC	GO:0030904	retromer complex	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
MF	GO:0042285	xylosyltransferase activity	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	HCCA
BP	GO:0043574	peroxisomal transport	IEP	HCCA
BP	GO:0044242	cellular lipid catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	HCCA
BP	GO:0045039	protein insertion into mitochondrial inner membrane	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0045089	positive regulation of innate immune response	IEP	HCCA
BP	GO:0045165	cell fate commitment	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0046416	D-amino acid metabolic process	IEP	HCCA
BP	GO:0046438	D-cysteine metabolic process	IEP	HCCA
MF	GO:0047560	3-dehydrosphinganine reductase activity	IEP	HCCA
MF	GO:0047769	arogenate dehydratase activity	IEP	HCCA
MF	GO:0048256	flap endonuclease activity	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050778	positive regulation of immune response	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051189	prosthetic group metabolic process	IEP	HCCA
BP	GO:0051204	protein insertion into mitochondrial membrane	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
MF	GO:0051499	D-aminoacyl-tRNA deacylase activity	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0072662	protein localization to peroxisome	IEP	HCCA
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0090151	establishment of protein localization to mitochondrial membrane	IEP	HCCA
BP	GO:0090435	protein localization to nuclear envelope	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	HCCA
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007135	Atg3/Atg10	199	259

External Links

PLAZA 3.0 Dicots	AT5G61500

AT5G61500

Expression Profile

Co-expression Networks

Functional Annotation