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  5. AT5G61940

AT5G61940


Description : Ubiquitin carboxyl-terminal hydrolase-related protein


Gene families : OG_01_0000436 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000436_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G61940
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT2G27630 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000706 meiotic DNA double-strand break processing IEP HCCA
BP GO:0000729 DNA double-strand break processing IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0004108 citrate (Si)-synthase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006011 UDP-glucose metabolic process IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006266 DNA ligation IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006323 DNA packaging IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
CC GO:0008278 cohesin complex IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0009226 nucleotide-sugar biosynthetic process IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0010032 meiotic chromosome condensation IEP HCCA
BP GO:0010214 seed coat development IEP HCCA
MF GO:0010491 UTP:arabinose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017103 UTP:galactose-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0031048 heterochromatin assembly by small RNA IEP HCCA
BP GO:0033356 UDP-L-arabinose metabolic process IEP HCCA
BP GO:0034086 maintenance of sister chromatid cohesion IEP HCCA
BP GO:0034090 maintenance of meiotic sister chromatid cohesion IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0036440 citrate synthase activity IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0046398 UDP-glucuronate metabolic process IEP HCCA
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0047338 UTP:xylose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0047350 glucuronate-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0048446 petal morphogenesis IEP HCCA
BP GO:0048830 adventitious root development IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051177 meiotic sister chromatid cohesion IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP HCCA
BP GO:0051455 monopolar spindle attachment to meiosis I kinetochore IEP HCCA
MF GO:0051748 UTP-monosaccharide-1-phosphate uridylyltransferase activity IEP HCCA
BP GO:0051754 meiotic sister chromatid cohesion, centromeric IEP HCCA
BP GO:0052573 UDP-D-galactose metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070601 centromeric sister chromatid cohesion IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR006866 DUF627_N 17 123
IPR006865 DUF629 196 658
PLAZA 3.0 Dicots AT5G61940