AT5G63180

Description : Pectin lyase-like superfamily protein

Gene families : OG_01_0000806 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000806_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G63180

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT1G67750	No alias	Pectate lyase family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G24780	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
MF	GO:0016829	lyase activity	ISS	Interproscan
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	ISS	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	190	347

External Links

PLAZA 3.0 Dicots	AT5G63180