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  5. Cre01.g003463

Cre01.g003463


Description : DNA mismatch repair protein MSH2 OS=Zea mays


Gene families : OG_01_0007145 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007145_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g003463
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT3G18524 No alias MUTS homolog 2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g08420.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_850V3.1 No alias MUTS homolog 2 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0031390 Ctf18 RFC-like complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007695 DNA_mismatch_repair_MutS-lik_N 35 134
IPR007696 DNA_mismatch_repair_MutS_core 332 570
IPR000432 DNA_mismatch_repair_MutS_C 658 847
IPR007860 DNA_mmatch_repair_MutS_con_dom 154 298
No external refs found!