AT1G28130

Description : Auxin-responsive GH3 family protein

Gene families : OG_01_0000291 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000291_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G28130
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT5G13380	No alias	Auxin-responsive GH3 family protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g07600.1	No alias	Probable indole-3-acetic acid-amido synthetase GH3.8...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006694	steroid biosynthetic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008202	steroid metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IMP	Interproscan
BP	GO:0009733	response to auxin	ISS	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010252	auxin homeostasis	TAS	Interproscan
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IDA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016128	phytosteroid metabolic process	None	Extended
BP	GO:0016129	phytosteroid biosynthetic process	None	Extended
BP	GO:0016131	brassinosteroid metabolic process	None	Extended
BP	GO:0016132	brassinosteroid biosynthetic process	RCA	Interproscan
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	None	Extended
MF	GO:0016881	acid-amino acid ligase activity	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120178	steroid hormone biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
BP	GO:0001561	fatty acid alpha-oxidation	IEP	HCCA
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0003333	amino acid transmembrane transport	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004301	epoxide hydrolase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005388	P-type calcium transporter activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005811	lipid droplet	IEP	HCCA
BP	GO:0006638	neutral lipid metabolic process	IEP	HCCA
BP	GO:0006639	acylglycerol metabolic process	IEP	HCCA
BP	GO:0006811	ion transport	IEP	HCCA
BP	GO:0006812	cation transport	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0006820	anion transport	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008970	phospholipase A1 activity	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009688	abscisic acid biosynthetic process	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0009830	cell wall modification involved in abscission	IEP	HCCA
MF	GO:0009927	histidine phosphotransfer kinase activity	IEP	HCCA
BP	GO:0010029	regulation of seed germination	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
BP	GO:0010187	negative regulation of seed germination	IEP	HCCA
BP	GO:0010222	stem vascular tissue pattern formation	IEP	HCCA
BP	GO:0010345	suberin biosynthetic process	IEP	HCCA
MF	GO:0010436	carotenoid dioxygenase activity	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015562	efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transport	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016801	hydrolase activity, acting on ether bonds	IEP	HCCA
MF	GO:0016803	ether hydrolase activity	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0019829	ATPase-coupled cation transmembrane transporter activity	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0032973	amino acid export across plasma membrane	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0034599	cellular response to oxidative stress	IEP	HCCA
BP	GO:0034614	cellular response to reactive oxygen species	IEP	HCCA
MF	GO:0034639	L-amino acid efflux transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0042759	long-chain fatty acid biosynthetic process	IEP	HCCA
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	HCCA
MF	GO:0043424	protein histidine kinase binding	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0044242	cellular lipid catabolic process	IEP	HCCA
BP	GO:0044277	cell wall disassembly	IEP	HCCA
MF	GO:0045549	9-cis-epoxycarotenoid dioxygenase activity	IEP	HCCA
BP	GO:0046339	diacylglycerol metabolic process	IEP	HCCA
BP	GO:0046340	diacylglycerol catabolic process	IEP	HCCA
BP	GO:0046461	neutral lipid catabolic process	IEP	HCCA
BP	GO:0046462	monoacylglycerol metabolic process	IEP	HCCA
BP	GO:0046464	acylglycerol catabolic process	IEP	HCCA
BP	GO:0046503	glycerolipid catabolic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0047372	acylglycerol lipase activity	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
MF	GO:0050062	long-chain-fatty-acyl-CoA reductase activity	IEP	HCCA
MF	GO:0050734	hydroxycinnamoyltransferase activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0052651	monoacylglycerol catabolic process	IEP	HCCA
BP	GO:0071407	cellular response to organic cyclic compound	IEP	HCCA
BP	GO:0071446	cellular response to salicylic acid stimulus	IEP	HCCA
BP	GO:0071731	response to nitric oxide	IEP	HCCA
BP	GO:0071732	cellular response to nitric oxide	IEP	HCCA
BP	GO:0080036	regulation of cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0080144	amino acid homeostasis	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:0140115	export across plasma membrane	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1900140	regulation of seedling development	IEP	HCCA
BP	GO:1901699	cellular response to nitrogen compound	IEP	HCCA
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	HCCA
BP	GO:1902609	(R)-2-hydroxy-alpha-linolenic acid biosynthetic process	IEP	HCCA
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
BP	GO:1903825	organic acid transmembrane transport	IEP	HCCA
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004993	GH3	17	579

External Links

PLAZA 3.0 Dicots	AT1G28130

AT1G28130

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation