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  5. Cre01.g030850

Cre01.g030850


Description : Protein degradation.26S proteasome.20S core protease.alpha-type subunits.alpha type-4 component


Gene families : OG_01_0002046 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g030850
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT3G51260 No alias 20S proteasome alpha subunit PAD1 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g07820.1 No alias component alpha type-4 of 26S proteasome 0.13 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_9650V3.1 No alias proteasome alpha subunit D2 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_7610V3.1 No alias proteasome alpha subunit D2 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_8390V3.1 No alias proteasome alpha subunit D2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_15655.1 No alias component alpha type-4 of 26S proteasome 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP HCCA
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP HCCA
CC GO:0031300 intrinsic component of organelle membrane IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR000426 Proteasome_asu_N 5 27
IPR001353 Proteasome_sua/b 28 209
No external refs found!